Int J Stem Cells.  2018 Nov;11(2):235-241. 10.15283/ijsc18036.

Mbd3 Promotes Reprogramming of Primary Human Fibroblasts

Affiliations
  • 1Department of Haematology, University College London, Cancer Institute, London, UK. amit.nathwani@ucl.ac.uk
  • 2Katharine Dormandy Haemophilia and Thrombosis Centre, Royal Free NHS Trust, London, UK.
  • 3National Health Services Blood and Transplant, Oak House, Reeds Crescent, Watford, Hertfordshire, UK.
  • 4Centre for Paediatrics, Barts and The London Medical School, Blizard Institute, Queen Mary University of London, London, UK.

Abstract

Mbd3 (Methyl-CpG binding domain protein), a core member of NuRD (nucleosome remodelling and deacetylation) is essential for embryogenesis. However, its role in reprogramming of somatic cells into induced pluripotent stem cells (iPSC) remains controversial. Some reports suggest that Mbd3 inhibits pluripotency, whilst others show that it greatly enhances reprogramming efficiency. Our study is the first to assess the role of Mbd3 on reprogramming of primary human fibroblasts using Yamanaka episomal plasmids (Reprogramming factors (RF) under feeder-free conditions. We showed that shRNA-mediated partial depletion of Mbd3 resulted in >5-fold reduction in the efficiency of reprogramming of primary human fibroblasts. Furthermore, iPSC that emerged after knock-down of Mbd3 were incapable of trilineage differentiation even though they expressed all markers of pluripotency. In contrast, over-expression of the Mbd3b isoform along with the Yamanaka episomal plasmids increased the number of fibroblast derived iPSC colonies by at least two-fold. The resulting colonies were capable of trilineage differentiation. Our results, therefore, suggest that Mbd3 appears to play an important role in reprogramming of primary human fibroblasts, which provides further insight into the biology of reprogramming but also has direct implication for translation of iPSC to clinic.

Keyword

Mbd3; Induced pluripotent stem cells; Episomal reprogramming; Fibroblasts

MeSH Terms

Biology
Embryonic Development
Female
Fibroblasts*
Humans*
Induced Pluripotent Stem Cells
Plasmids
Pregnancy

Figure

  • Fig. 1 Mbd3 is required for Episomal Reprogramming. (A) Experimental design used to address the kinetics and efficiency of reprogramming in human dermal fibroblasts. Human fibroblasts were transfected with episomal plasmids encoding pCXLE-hOct3/4-shp53, pCXLE-hSK (Sox-2 and Klf4) and pCXLE-hUL (L-Myc and Lin28) (Reprogramming factors-RF) or RF+shpMbd3 or RF+Mbd3b or GFP only. After transfection, the cells were maintained in Essential 8 media supplemented with 0.5mM sodium butyrate until day 12 and thereafter maintained in Essential 8 media only. Transfection efficiency was measured by Flow Cytometry after a minimum of 24 hours of transfection with an average of 32.8±1.68%. (B) Immunoblot analysis for Mbd3 expression transfected with shpMbd3 compared to sham. Densitometry plot shows that cells transfected with shpMbd3 had 50% reduction in expression of Mbd3 compared to sham (p<0.05). (C) iPSC colony formation in fibroblasts was assessed by alkaline phosphatase (AP) staining between day 25~30 and the results showed that shpMbd3 reduced the number of iPSC colonies. (D) Quantification of AP staining further confirmed reduction of iPSC colonies formed in cells treated with RF+shpMbd3 compared with RF in patient fibroblasts RPD1 and PD1 and BJ neonatal cell line (n=3). Colony number is per 1×106 fibroblasts (p<0.05).

  • Fig. 2 Characterisation of iPSC colonies. (A) Representative phase images of iPSC derived from fibroblasts transfected RF and cells transfected with RF+shpMbd3. Morphologically they appear to be similar. Immunostaining with pluripotency markers (green) and counter staining with DAPI (blue) of iPSC derived from fibroblasts transfected with RF only and those transfected with RF+shpMbd3 with TRA-1-81 and TRA-1-60. Scale bar is 200μm. (B) Q-PCR showed expression of pluripotency genes (Oct-4 and Nanog respectively) in cells treated with RF and RF+ shpMbd3. All results were normalised to GAPDH. (n=3 Error bars±S.E.M). (C) Q-PCR showed up- regulation of lineage specific genes: Cdx2 (mesoderm), Pax6 (ectoderm) and MixI (endoderm) in cells treated with RF embryoid bodies relative to respective iPSC line (n=3 Error bars± S.E.M).

  • Fig. 3 Over-expression of Mbd3b facilitates reprogramming. (A) Immunoblot analysis for cells over-expressing Mbd3b compared to sham. Densitometry plot showed that cells over-expressing Mbd3b increased its expression by almost 50% compared to sham (p<0.05). (B) Quantification of iPSC colonies generated from fibroblasts transfected with RF+Mbd3b compared to cells treated with RF in BJ neonatal cell line and patient fibroblasts (RPD1 and PD1). A two fold increase is seen in the number of colonies in RF+Mbd3b compared to RF only (p<0.05). (C) Representative phase images of iPSC of established cell lines transfected with RF and RF+Mbd3b. Immunostaining with pluripotency markers (green) and counter staining with DAPI (blue) of cells treated with RF and RF+Mbd3b with TRA-1-81 and TRA-1-60. Scale bar is 200μm. (Error bars±S.E.M). (D) Q-PCR showed expression of pluripotency genes (Oct-4, Nanog and Sox-2 respectively) in cells treated with RF and RF+Mbd3b. All results were normalised to GAPDH (n=3 Error bars±S.E.M). (E) Representative images of embryoid bodies (EBs) generated from RF (left), and RF+Mbd3b (right). (F) Q-PCR showed up-regulation of lineage specific genes: Cdx2 (mesoderm), Pax6 (ectoderm) and MixI (endoderm) in conditions treated with RF EBs and RF+Mbd3b EBs (G) relative to respective iPSC line.


Reference

References

1. Takahashi K, Tanabe K, Ohnuki M, Narita M, Ichisaka T, Tomoda K, Yamanaka S. Induction of pluripotent stem cells from adult human fibroblasts by defined factors. Cell. 2007; 131:861–872. DOI: 10.1016/j.cell.2007.11.019. PMID: 18035408.
Article
2. Okita K, Matsumura Y, Sato Y, Okada A, Morizane A, Okamoto S, Hong H, Nakagawa M, Tanabe K, Tezuka K, Shibata T, Kunisada T, Takahashi M, Takahashi J, Saji H, Yamanaka S. A more efficient method to generate integration-free human iPS cells. Nat Methods. 2011; 8:409–412. DOI: 10.1038/nmeth.1591. PMID: 21460823.
Article
3. Goh PA, Caxaria S, Casper C, Rosales C, Warner TT, Coffey PJ, Nathwani AC. A systematic evaluation of integration free reprogramming methods for deriving clinically relevant patient specific induced pluripotent stem (iPS) cells. PLoS One. 2013; 8:e81622. DOI: 10.1371/journal.pone.0081622. PMID: 24303062. PMCID: 3841145.
Article
4. Kaji K, Nichols J, Hendrich B. Mbd3, a component of the NuRD co-repressor complex, is required for development of pluripotent cells. Development. 2007; 134:1123–1132. DOI: 10.1242/dev.02802. PMID: 17287250.
Article
5. Hendrich B, Guy J, Ramsahoye B, Wilson VA, Bird A. Closely related proteins MBD2 and MBD3 play distinctive but interacting roles in mouse development. Genes Dev. 2001; 15:710–723. DOI: 10.1101/gad.194101. PMID: 11274056. PMCID: 312657.
Article
6. Luo M, Ling T, Xie W, Sun H, Zhou Y, Zhu Q, Shen M, Zong L, Lyu G, Zhao Y, Ye T, Gu J, Tao W, Lu Z, Grummt I. NuRD blocks reprogramming of mouse somatic cells into pluripotent stem cells. Stem Cells. 2013; 31:1278–1286. DOI: 10.1002/stem.1374. PMID: 23533168.
Article
7. Rais Y, Zviran A, Geula S, Gafni O, Chomsky E, Viukov S, Mansour AA, Caspi I, Krupalnik V, Zerbib M, Maza I, Mor N, Baran D, Weinberger L, Jaitin DA, Lara-Astiaso D, Blecher-Gonen R, Shipony Z, Mukamel Z, Hagai T, Gilad S, Amann-Zalcenstein D, Tanay A, Amit I, Novershtern N, Hanna JH. Deterministic direct reprogramming of somatic cells to pluripotency. Nature. 2013; 502:65–70. DOI: 10.1038/nature12587. PMID: 24048479.
Article
8. dos Santos RL, Tosti L, Radzisheuskaya A, Caballero IM, Kaji K, Hendrich B, Silva JC. MBD3/NuRD facilitates induction of pluripotency in a context-dependent manner. Cell Stem Cell. 2014; 15:102–110. DOI: 10.1016/j.stem.2014.04.019. PMID: 24835571. PMCID: 4082719.
Article
9. Onder TT, Kara N, Cherry A, Sinha AU, Zhu N, Bernt KM, Cahan P, Marcarci BO, Unternaehrer J, Gupta PB, Lander ES, Armstrong SA, Daley GQ. Chromatin-modifying enzymes as modulators of reprogramming. Nature. 2012; 483:598–602. DOI: 10.1038/nature10953. PMID: 22388813. PMCID: 3501145.
Article
10. Roloff TC, Ropers HH, Nuber UA. Comparative study of methyl-CpG-binding domain proteins. BMC Genomics. 2003; 4:1. DOI: 10.1186/1471-2164-4-1. PMID: 12529184. PMCID: 149351.
Article
11. Kaji K, Caballero IM, MacLeod R, Nichols J, Wilson VA, Hendrich B. The NuRD component Mbd3 is required for pluripotency of embryonic stem cells. Nat Cell Biol. 2006; 8:285–292. DOI: 10.1038/ncb1372. PMID: 16462733.
Article
12. Beers J, Gulbranson DR, George N, Siniscalchi LI, Jones J, Thomson JA, Chen G. Passaging and colony expansion of human pluripotent stem cells by enzyme-free dissociation in chemically defined culture conditions. Nat Protoc. 2012; 7:2029–2040. DOI: 10.1038/nprot.2012.130. PMID: 23099485. PMCID: 3571618.
Article
13. McIntosh J, Lenting PJ, Rosales C, Lee D, Rabbanian S, Raj D, Patel N, Tuddenham EG, Christophe OD, McVey JH, Waddington S, Nienhuis AW, Gray JT, Fagone P, Mingozzi F, Zhou SZ, High KA, Cancio M, Ng CY, Zhou J, Morton CL, Davidoff AM, Nathwani AC. Therapeutic levels of FVIII following a single peripheral vein administration of rAAV vector encoding a novel human factor VIII variant. Blood. 2013; 121:3335–3344. DOI: 10.1182/blood-2012-10-462200. PMID: 23426947. PMCID: 3637010.
Article
14. Štefková K, Procházkováv J, Pacherník J. Alkaline phosphatase in stem cells. Stem cells Int. 2015; DOI: 10.1155/2015/628368.
Article
15. Buta C, David R, Dressel R, Emgård M, Fuchs C, Gross U, Healy L, Hescheler J, Kolar R, Martin U, Mikkers H, Müller FJ, Schneider RK, Seiler AE, Spielmann H, Weitzer G. Reconsidering pluripotency tests: do we still need teratoma assays? Stem Cell Res. 2013; 11:552–562. DOI: 10.1016/j.scr.2013.03.001. PMID: 23611953.
Article
16. Zhang L, Zheng Y, Sun Y, Zhang Y, Yan J, Chen Z, Jiang H. MiR-134-Mbd3 axis regulates the induction of pluripotency. J Cell Mol Med. 2016; 20:1150–1158. DOI: 10.1111/jcmm.12805. PMID: 26929159. PMCID: 4882991.
Article
17. Koh KP, Yabuuchi A, Rao S, Huang Y, Cunniff K, Nardone J, Laiho A, Tahiliani M, Sommer CA, Mostoslavsky G, Lahesmaa R, Orkin SH, Rodig SJ, Daley GQ, Rao A. Tet1 and Tet2 regulate 5-hydroxymethylcytosine production and cell lineage specification in mouse embryonic stem cells. Cell Stem Cell. 2011; 8:200–213. DOI: 10.1016/j.stem.2011.01.008. PMID: 21295276. PMCID: 3134318.
Article
Full Text Links
  • IJSC
Actions
Cited
CITED
export Copy
Close
Share
  • Twitter
  • Facebook
Similar articles
Copyright © 2024 by Korean Association of Medical Journal Editors. All rights reserved.     E-mail: koreamed@kamje.or.kr