- TRAPR: R Package for Statistical Analysis and Visualization of RNA-Seq Data
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Lim JH, Lee SY, Kim JH
- KMID: 2375585
- Genomics Inform.
- 2017 Mar;15(1):51-53.
- doi: 10.5808/GI.2017.15.1.51
High-throughput transcriptome sequencing, also known as RNA sequencing (RNA-Seq), is a standard technology for measuring gene expression with unprecedented accuracy. Numerous bioconductor packages have been developed for the statistical analysis... -
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- Discrepant Satellitism for Identification of Granulicatella adiacens Isolates
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Koh YR, Yi J, Kim HH, Chang CL, Kim SY
- KMID: 1791916
- Ann Lab Med.
- 2014 Mar;34(2):174-176.
- doi: 10.3343/alm.2014.34.2.174
No abstract available. -
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- Identification of Alternative Splicing and Fusion Transcripts in Non-Small Cell Lung Cancer by RNA Sequencing
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Hong Y, Kim WJ, Bang CY, Lee JC, Oh YM
- KMID: 2320770
- Tuberc Respir Dis.
- 2016 Apr;79(2):85-90.
- doi: 10.4046/trd.2016.79.2.85
BACKGROUND: Lung cancer is the most common cause of cancer related death. Alterations in gene sequence, structure, and expression have an important role in the pathogenesis of lung cancer. Fusion... -
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- First Korean Case of Mycobacterium arupense Tenosynovitis
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Lee SJ, Hong SK, Park SS, Kim EC
- KMID: 1791942
- Ann Lab Med.
- 2014 Jul;34(4):321-324.
- doi: 10.3343/alm.2014.34.4.321
No abstract available. -
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- The First Case of Eggerthella lenta Bacteremia in Korea
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Lee HJ, Hong SK, Choi WS, Kim EC
- KMID: 1791917
- Ann Lab Med.
- 2014 Mar;34(2):177-179.
- doi: 10.3343/alm.2014.34.2.177
No abstract available. -
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- RNA sequencing of the nephron transcriptome: a technical note
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Lee JW
- KMID: 2381547
- Kidney Res Clin Pract.
- 2015 Dec;34(4):219-227.
- doi: 10.1016/j.krcp.2015.08.008
To understand the functions of the kidney, the transcriptome of each part of the nephron needs to be profiled using a highly sensitive and unbiased tool. RNA sequencing (RNA-seq) has... -
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- Current Challenges in Bacterial Transcriptomics
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Cho S, Cho Y, Lee S, Kim J, Yum H, Kim SC, Cho BK
- KMID: 1494260
- Genomics Inform.
- 2013 Jun;11(2):76-82.
- doi: 10.5808/GI.2013.11.2.76
Over the past decade or so, dramatic developments in our ability to experimentally determine the content and function of genomes have taken place. In particular, next-generation sequencing technologies are now... -
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- Capnocytophaga sputigena Bacteremia in a Patient with Chronic Lymphocytic Leukemia
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Kim JA, Hong SK, Kim EC
- KMID: 1791943
- Ann Lab Med.
- 2014 Jul;34(4):325-327.
- doi: 10.3343/alm.2014.34.4.325
No abstract available. -
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- Two Cases of Mycoplasma pneumoniae Pneumonia with A2063G Mutation in the 23S rRNA Gene in Siblings
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Hong JH, Chun JK, Uh Y, Oh KJ, Kim J, Yoon KJ
- KMID: 1781300
- Ann Lab Med.
- 2013 Jan;33(1):65-68.
- doi: 10.3343/alm.2013.33.1.65
We describe 2 cases of pneumonia caused by the same macrolide-resistant Mycoplasma pneumoniae in siblings. M. pneumoniae was identified using real-time PCR. Direct sequence analysis of the 23S rRNA gene... -
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- Identification of neoantigens derived from alternative splicing and RNA modification
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Park J, Chung YJ
- KMID: 2462037
- Genomics Inform.
- 2019 Sep;17(3):e23.
- doi: 10.5808/GI.2019.17.3.e23
The acquisition of somatic mutations is the most common event in cancer. Neoantigens expressed from genes with mutations acquired during carcinogenesis can be tumor-specific. Since the immune system recognizes tumor-specific... -
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- Identification of a Novel Splice Variant (c.423-8A>G) of APC by RNA Sequencing
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Kim A, Kim HK, Ahn S, Hong YS, Lim SB, Byeon JS, Chun S, Min WK, Lee W
- KMID: 2470335
- Ann Lab Med.
- 2020 Jul;40(4):345-347.
- doi: 10.3343/alm.2020.40.4.345
No abstract available. -
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- Characterization of sphere-forming HCT116 clones by whole RNA sequencing
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Chung E, Oh I, Lee KY
- KMID: 2160947
- Ann Surg Treat Res.
- 2016 Apr;90(4):183-193.
- doi: 10.4174/astr.2016.90.4.183
PURPOSE: To determine CD133+ cells defined as cancer stem cells (CSCs) in colon cancer, we examined whether CD133+ clones in HCT116 demonstrate known features of CSCs like sphere-forming ability, chemodrug-resistance,... -
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- Identification of ERBB Pathway-Activated Cells in Triple-Negative Breast Cancer
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Cho SY
- KMID: 2447793
- Genomics Inform.
- 2019 Mar;17(1):e3.
- doi: 10.5808/GI.2019.17.1.e3
Intratumor heterogeneity within a single tumor mass is one of the hallmarks of malignancy and has been reported in various tumor types. The molecular characterization of intratumor heterogeneity in breast... -
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- Small RNA sequencing profiles of mir-181 and mir-221, the most relevant microRNAs in acute myeloid leukemia
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Lee YG, Kim I, Oh S, Shin DY, Koh Y, Lee KW
- KMID: 2452501
- Korean J Intern Med.
- 2019 Jan;34(1):178-183.
- doi: 10.3904/kjim.2017.102
BACKGROUND/AIMS: To evaluate and select microRNAs relevant to acute myeloid leukemia (AML) pathogenesis, we analyzed differential microRNA expression by quantitative small RNA next-generation sequencing using duplicate marrow samples from individual... -
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- A two-component signal transduction system contributes to the virulence of Riemerella anatipestifer
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Wang Q, Chen M, Zhang W
- KMID: 2407625
- J Vet Sci.
- 2018 Mar;19(2):260-270.
- doi: 10.4142/jvs.2018.19.2.260
Similar to other studies of bacterial pathogens, current studies of the pathogenesis of Riemerella anatipestifer (RA) are focused mainly on in vitro culture conditions. To elucidate further the pathogenesis of... -
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- A Case of Helicobacter cinaedi Bacteremia in an Asplenic Patient
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Kim SK, Cho EJ, Sung H, An D, Park SJ, Kim MN, Nam GB
- KMID: 2434486
- Ann Lab Med.
- 2012 Nov;32(6):433-437.
Helicobacter cinaedi is an enterohepatic species. It can cause bacteremia, gastroenteritis, and cellulitis, particularly in immunocompromised individuals, such as those with acquired immunodeficiency syndrome, malignancy, or alcoholism. There are no... -
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- Rapid Whole-genome Sequencing of Zika Viruses using Direct RNA Sequencing
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Kim JH, Kim J, Koo BS, Oh H, Hong JJ, Hwang ES
- KMID: 2468031
- J Bacteriol Virol.
- 2019 Sep;49(3):115-123.
- doi: 10.4167/jbv.2019.49.3.115
Zika virus (ZIKV) is one of the pathogens which is transmitted world widely, but there are no effective drugs and vaccines. Whole genome sequencing (WGS) of viruses could be applied... -
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- Understanding the Molecular Mechanisms of Asthma through Transcriptomics
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Park HW, Weiss ST
- KMID: 2471225
- Allergy Asthma Immunol Res.
- 2020 May;12(3):399-411.
- doi: 10.4168/aair.2020.12.3.399
The transcriptome represents the complete set of RNA transcripts that are produced by the genome under a specific circumstance or in a specific cell. High-throughput methods, including microarray and bulk... -
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- Single Cell RNA-Sequencing for the Study of Atherosclerosis
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Hajkarim M, Won KJ
- KMID: 2458380
- J Lipid Atheroscler.
- 2019 Sep;8(2):152-161.
- doi: 10.12997/jla.2019.8.2.152
Atherosclerosis is a major cause of coronary artery disease and stroke. A massive and new type of data has finally arrived in the field of atherosclerosis: single cell RNA sequencing... -
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- HisCoM-PAGE: software for hierarchical structural component models for pathway analysis of gene expression data
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Mok L, Park T
- KMID: 2468871
- Genomics Inform.
- 2019 Dec;17(4):e45.
- doi: 10.5808/GI.2019.17.4.e45
To identify pathways associated with survival phenotypes using gene expression data, we recently proposed the hierarchical structural component model for pathway analysis of gene expression data (HisCoM-PAGE) method. The HisCoM-PAGE... -
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