Clin Endosc.  2025 Jan;58(1):25-39. 10.5946/ce.2024.147.

Alteration in gut microbiota after colonoscopy: proposed mechanisms and the role of probiotic interventions

Affiliations
  • 1Department of Internal Medicine, Daegu Catholic University School of Medicine, Daegu, Korea
  • 2Digestive Disease Research Institute, Wonkwang University College of Medicine, Iksan, Korea
  • 3Department of Physiology, Wonkwang University School of Medicine, Iksan, Korea
  • 4Department of Physiology and Cell Biology, University of Nevada School of Medicine, Reno, NV, USA
  • 5Department of Gastroenterology, Wonkwang University School of Medicine, Iksan, Korea
  • 6Good Breath Clinic, Gunpo, Korea

Abstract

Colonoscopy, a widely used procedure for diagnosing and treating colonic diseases, induces transient gastrointestinal symptoms and alterations in the gut microbiota. This review comprehensively examines the evidence on alterations in the gut microbiota following colonoscopy and their possible mechanisms. Factors such as rapid colonic evacuation, increased osmolality, and mucus thinning caused by bowel preparation and exposure to oxygen during the procedure contribute to these alterations. Typically, the alterations revert to the baseline within a short time. However, their long-term implications remain unclear, necessitating further investigation. Split-dose bowel preparation and CO2 insufflation during the procedure result in fewer alterations in the gut microbiota. Probiotic administration immediately after colonoscopy shows promise in reducing alterations and gastrointestinal symptoms. However, the widespread use of probiotics remains controversial due to the transient nature of both the symptoms and gut microbial alterations following a colonoscopy. Probiotics may offer greater benefits to individuals with preexisting gastrointestinal symptoms. Thus, probiotic administration may be a viable option for selected patients.

Keyword

Colonoscopy; Dysbiosis; Microbiota; Probiotics
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