1). Doria-Rose NA, Learn GH, Rodrigo AG, Nickle DC, Li F, Mahalanabis M, Hensel MT, McLaughlin S, Edmonson PF, Montefiori D, Barnett SW, Haigwood NL, Mullins JI. Human immunodeficiency virus type 1 subtype B ancestral envelope protein is functional and elicits neutralizing antibodies in rabbits similar to those elicited by a circulating subtype B envelope. J Virol. 79:11214–11224. 2005.
Article
2). Douek DC, Kwong PD, Nabel GJ. The rational design of an AIDS vaccine. Cell. 124:677–681. 2006.
Article
3). Ellenberger DL, Li B, Lupo LD, Owen SM, Nkengasong J, Kadio-Morokro MS, Smith J, Robinson H, Ackers M, Greenberg A, Folks T, Butera S. Generation of a consensus sequence from prevalent and incident HIV-1 infections in West Africa to guide AIDS vaccine development. Virology. 302:155–163. 2002.
Article
4). Felsenstein J. PHYLIP (Phylogeny Inference Package) version 3.5c. Distributed by the author. Department of Genetics, University of Washington, Seattle. 1993.
5). Gao F, Weaver EA, Lu Z, Li Y, Liao HX, Ma B, Alam SM, Scearce RM, Sutherland LL, Yu JS, Decker JM, Shaw GM, Montefiori DC, Korber BT, Hahn BH, Haynes BF. Antigenicity and immunogenicity of a synthetic human immunodeficiency virus type 1 group m consensus envelope glycoprotein. J Virol. 79:1154–1163. 2005.
Article
6). Garber DA, Silvestri G, Feinberg MB. Prospects for an AIDS vaccine: three big questions, no easy answers. Lancet Infect Dis. 4:397–413. 2004.
Article
7). Gaschen B, Taylor J, Yusim K, Foley B, Gao F, Lang D, Novitsky V, Haynes B, Hahn BH, Bhattacharya T, Korber B. Diversity considerations in HIV-1 vaccine selection. Science. 296:2354–2360. 2002.
Article
8). Kang MR, Cho YK, Chun J, Kim YB, Lee I, Lee HJ, Kim SH, Kim YK, Yoon K, Yang JM, Kim JM, Shin YO, Kang C, Lee JS, Choi KW, Kim DG, Fitch WM, Kim S. Phylogenetic analysis of the nef gene reveals a distinctive monophyletic clade in Korean HIV-1 cases. J Acquir Immune Defic Syndr Hum Retrovirol. 17:58–68. 1998.
Article
9). Kim YB, Cho YK. Monophyletic clade of HIV-1 subtype B in Korea: evolutionary pressure or single introduction? AIDS Res Hum Retroviruses. 19:619–623. 2003.
Article
10). Kim YB, Cho YK, Lee HJ, Kim CK, Kim YK, Yang JM. Molecular phylogenetic analysis of human immunodeficiency virus type 1 strains obtained from Korean patients: env gene sequences. AIDS Res Hum Retroviruses. 15:303–307. 1999.
Article
11). Kothe DL, Li Y, Decker JM, Bibollet-Ruche F, Zammit KP, Salazar MG, Chen Y, Weng Z, Weaver EA, Gao F, Haynes BF, Shaw GM, Korber BT, Hahn BH. Ancestral and consensus envelope immunogens for HIV-1 subtype C. Virology. 352:438–449. 2006.
Article
12). Lee DH, Yoon Y, Lee CH. Phylogenetic analysis of the HIV-1 nef gene from Korean isolates. J Microbiol. 41:232–238. 2003.
13). Nickle DC, Jensen MA, Gottlieb GS, Shriner D, Learn GH, Rodrigo AG, Mullins JI. Consensus and ancestral state HIV vaccines. Science. 299:1515–1518. 2003.
Article
14). Novitsky V, Smith UR, Gilbert P, McLane MF, Chigwedere P, Williamson C, Ndung'u T, Klein I, Chang SY, Peter T, Thior I, Foley BT, Gaolekwe S, Rybak N, Gaseitsiwe S, Vannberg F, Marlink R, Lee TH, Essex M. Human immunodeficiency virus type 1 subtype C molecular phylogeny: consensus sequence for an AIDS vaccine design? J Virol. 76:5435–5451. 2002.
Article
15). Page RD. TREEVIEW: An application to display phylogenetic trees on personal computers. Comput Appl Biosci. 12:357–358. 1996.
16). Park CS, Kim MS, Lee SD, Kim SS, Lee KM, Lee CH. Molecular phylogenetic analysis of HIV-1 vif gene from Korean isolates. J Microbiol. 44:655–659. 2006.
17). Sung H, Foley BT, Bae IG, Chi HS, Cho YK. Phylogenetic analysis of reverse transcriptase in antiretroviral drug-naive Korean HIV type 1 patients. AIDS Res Hum Retroviruses. 17:1549–1554. 2001.
Article
18). Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25:4876–4882. 1997.
Article