Korean J Phys Anthropol.  2014 Dec;27(4):197-210. 10.11637/kjpa.2014.27.4.197.

Expression and Characterization of Genes by Expressed Sequence Tag Analysis in the Rat Thymus during Regeneration following Acute Thymic Involution Induced by Cyclophosphamide

• Lee KH
• Lee HW
• Choi HJ
• Min HJ
• Baek SY
• Yoon S

• KMID: 1982457
• DOI: http://doi.org/10.11637/kjpa.2014.27.4.197

Abstract

The thymus is the central lymphoid organ for the development of bone marrow-derived precursor cells into mature T-cells. Understanding the molecular mechanism of thymic involution and regeneration is critical to develop methods to normalize or improve host immunity from the decreased immune function caused by thymic involution. In this study, the regenerating thymus cDNA library was constructed in the rat from a model of thymic involution and regeneration induced by cyclophosphamide. Expressed sequence tags (ESTs) were obtained by partial sequencing of 700 randomly selected insert-containing clones. A total of 630 ESTs were analyzed, of which 486 ESTs (78%) matched to known genes and 125 ESTs (19%) matched to other ESTs (unknown genes). The 19 ESTs (3%) did not match with any known sequences. The ESTs were grouped into six main functional categories: metabolism (44%), signaling components (20%), membrane transport (7%), cytoskeleton (2%), cell division (2%) and defense (2%). As a result of RT-PCR analysis, expression of putative gene 01, putative E2IG2 gene, musculin and osteoactivin significantly increased in rat thymus during regeneration. The putative gene 01 showed complete homology with mitochondrial ribosomal protein S4 by homology search and multiple alignment of amino acid. These results provide the extensive molecular information on thymus regeneration and will be useful source to identify various genes which may play an important role in the thymus regeneration as well as to clone novel genes. Furthermore, the availability of these data will serve as a basis for further research to understand the molecular mechanism of thymus regeneration.

Keyword

Expressed sequence tag (EST); Thymus; Gene expression; Cyclophosphamide; Regeneration; Rat

MeSH Terms

Animals
Cell Division
Clone Cells
Cyclophosphamide*
Cytoskeleton
Expressed Sequence Tags*
Gene Expression
Gene Library
Membranes
Metabolism
Rats*
Regeneration*
Ribosomal Proteins
T-Lymphocytes
Thymus Gland*
Cyclophosphamide
Ribosomal Proteins