- In silico analysis of putative drug and vaccine targets of the metabolic pathways of Actinobacillus pleuropneumoniae using a subtractive/comparative genomics approach
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Birhanu BT, Lee SJ, Park NH, Song JB, Park SC
- KMID: 2407618
- J Vet Sci.
- 2018 Mar;19(2):188-199.
- doi: 10.4142/jvs.2018.19.2.188
Actinobacillus pleuropneumoniae is a Gram-negative bacterium that resides in the respiratory tract of pigs and causes porcine respiratory disease complex, which leads to significant losses in the pig industry worldwide.... -
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- SFannotation: A Simple and Fast Protein Function Annotation System
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Yu DS, Kim BK
- KMID: 2026466
- Genomics Inform.
- 2014 Jun;12(2):76-78.
- doi: 10.5808/GI.2014.12.2.76
Owing to the generation of vast amounts of sequencing data by using cost-effective, high-throughput sequencing technologies with improved computational approaches, many putative proteins have been discovered after assembly and structural... -
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- Protein Backbone Torsion Angle-Based Structure Comparison and Secondary Structure Database Web Server
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Jung S, Bae SE, Ahn I, Son HS
- KMID: 2009109
- Genomics Inform.
- 2013 Sep;11(3):155-160.
- doi: 10.5808/GI.2013.11.3.155
Structural information has been a major concern for biological and pharmaceutical studies for its intimate relationship to the function of a protein. Three-dimensional representation of the positions of protein atoms... -
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- Analyses of Expressed Sequence Tags from of Chironomus riparius Using Pyrosequencing : Molecular Ecotoxicology Perspective
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Nair PG, Park SY, Choi J
- KMID: 2380160
- Environ Health Toxicol.
- 2011 ;26(1):e2011010.
OBJECTIVES: Chironomus riparius, a non-biting midge (Chironomidae, Diptera), is extensively used as a model organism in aquatic ecotoxicological studies, and considering the potential of C. riparius larvae as a bio-monitoring... -
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- Possible Roles of LAMMER Kinase Lkh1 in Fission Yeast by Comparative Proteome Analysis
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Cho SJ, Kim YH, Park HM, Shin KS
- KMID: 2312575
- Mycobiology.
- 2010 Jun;38(2):108-112.
To investigate the possible roles of LAMMER kinase homologue, Lkh1, in Schizosaccharomyces pombe, whole proteins were extracted from wild type and lkh1-deletion mutant cells and subjected to polyacrylamide gel electrophoresis.... -
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- WinBioDBs: A Windows-based Integrated Program for Manipulating Major Biological Databases
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Nam H, Lee JH, Park K
- KMID: 1469579
- Genomics Inform.
- 2009 Sep;7(3):175-177.
We have developed WinBioDBs with Windows interfaces, which include importing modules and searching interfaces for 10 major public databases such as GenBank, PIR, SwissProt, Pathway, EPD, ENZYME, REBASE, Prosite, Blocks,... -
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- Refactoring the Code for Visualizing Protein Database Information in a 3D Viewer for Software Reusability
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Chun YJ, Ham SI, Yang SD, Rhie A, Park HS
- KMID: 2166322
- Genomics Inform.
- 2008 Mar;6(1):50-53.
We have released five Java Application Programming Interface (API) packages for viewing three-dimensional structures of proteins from the Protein Data Bank. To this end, the user interface of an earlier... -
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- A Pattern Summary System Using BLAST for Sequence Analysis
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Choi HS, Kim DW, Ryu TW
- KMID: 2166243
- Genomics Inform.
- 2006 Dec;4(4):173-181.
Pattern finding is one of the important tasks in a protein or DNA sequence analysis. Alignment is the widely used technique for finding patterns in sequence analysis. BLAST (Basic Local... -
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- Theoretical Peptide Mass Distribution in the Non-Redundant Protein Database of the NCBI
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Lim DJ, Oh HS, Kim HB
- KMID: 2166213
- Genomics Inform.
- 2006 Jun;4(2):65-70.
Peptide mass mapping is the matching of experimentally generated peptides masses with the predicted masses of digested proteins contained in a database. To identify proteins by matching their constituent fragment... -
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- Protein Expression Profile using Two-Dimensional Gel Analysis in Squamous Cervical Cancer Patients
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Bae SM, Min HJ, Ding GH, Kwak SY, Cho YL, Nam KH, Park CH, Kim YW, Kim CK, Han BD, Lee YJ, Kim DK, Ahn WS
- KMID: 2270822
- Cancer Res Treat.
- 2006 Apr;38(2):99-107.
PURPOSE: Screening in cervical cancer is now progressing to discover candidate genes and proteins that may serve as biological markers and that play a role in tumor progression. We examined... -
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- Proteomic analyses of cervical cancer tissues by two-dimensional gel electrophoresis and mass spectrometry
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Lee SH, Bae SM, Kim OK, Kim HJ, Park EK, Lee HN, Kim YW, Ro DY, Lee JM, Namkoong S, Cho YL, Nam GH, Han BD, Kim YW, Kim CK, Ahn WS
- KMID: 2272627
- Korean J Obstet Gynecol.
- 2005 Jul;48(7):1686-1697.
OBJECTIVE: Comparison of protein expressions by two-dimensional gel electrophoresis (2-DE) in normal cervix and squamous cell carcinoma tissues in Korean women. METHODS: Normal cervix and squamous cell carcinoma tissues were solubilized... -
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- Comparison of Protein Expression in Normal Myometrium and Uterine Leiomyoma Using Two-Dimensional Gel Electrophoresis in Korean Women
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Lee SK, Bae SM, Kim KW, Kim MS, Park EK, Kim YW, Ro DY, Lee JM, Namkoong S, Kim CK, Ahn WS
- KMID: 2272298
- Korean J Obstet Gynecol.
- 2004 Apr;47(4):618-626.
OBJECTIVE: Comparison of protein expression by two-dimensional gel electrophoresis (2-DE) in normal myometrium and uterine leiomyoma in Korean women. METHODS: Normal myometrium and uterine leiomyoma tissues were solubilized with 2-DE... -
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- Analysis of Calcium-Binding Proteins of Mouse Spermatozoa by 2-Dimentional SDS-PAGE
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Gye MC
- KMID: 1573710
- Korean J Androl.
- 2000 Aug;18(2):105-109.
PURPOSE: To verify the expression of calcium-binding proteins in mouse spermatozoa. MATERIALS AND METHODS: Mouse sperm proteins were subjected to 2-dimentional SDS-PAGE combined with calcium shift in the presence or absence... -
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