Transl Clin Pharmacol.  2017 Sep;25(3):141-146. 10.12793/tcp.2017.25.3.141.

Caffsim: simulation of plasma caffeine concentrations implemented as an R package and Web-applications

Affiliations
  • 1Department of Clinical Pharmacology and Therapeutics, Asan Medical Center, University of Ulsan, Seoul 05505, Republic of Korea. ksbae@amc.seoul.kr

Abstract

Caffeine is a naturally-occurring central nervous system stimulant found in plant constituents including coffee, cocoa beans, and tea leaves. Consumption of caffeine through imbibing caffeinated drinks is rapidly growing among children, adolescents, and young adults, who tend to be more caffeine-sensitive than the rest of the general public; consequently, caffeine-related toxicities among these groups are also growing in number. However, a quantitative and interactive tool for predicting the plasma caffeine concentration that may lead to caffeine intoxication has yet to be developed. Using the previously established population-pharmacokinetic model, we developed "caffsim" R package and its web-based applications using Shiny and EDISON (EDucation-research Integration through Simulation On the Net). The primary aim of the software is to easily predict and calculate plasma caffeine concentration and pharmacokinetic parameters and visualize their changes after single or multiple ingestions of caffeine. The caffsim R package helps understand how plasma caffeine concentration changes over time and how long toxic concentration of caffeine can last in caffeine-sensitive groups. It may also help clinical evaluation of relationship between caffeine intake and toxicities when suspicious acute symptoms occur.

Keyword

caffeine; pharmacokinetics; R package

MeSH Terms

Adolescent
Cacao
Caffeine*
Central Nervous System
Child
Coffee
Humans
Pharmacokinetics
Plants
Plasma*
Tea
Young Adult
Caffeine
Coffee
Tea

Figure

  • Figure 1 Development workflow of the caffsim R package. Items on the left side can be executed in web browsers and the others are R functions that can be run on the R console. The shiny web-application or function enables users to interactively perform a simulation (Abbreviations: Web-app., web-application.).

  • Figure 2 Examples of the caffsim R package functions. A) examples by and , B) examples by and , C) examples by , and D) examples by and

  • Figure 3 Plasma concentration-time profiles derived from 5 times multiple dosing simulations with an interval of 8, 4, 2, and 1 hr. Values were generated by function for 500 subjects per each body weight group. Line plots show the arithmetic mean and shades denote the range of standard errors.

  • Figure 4 Shiny web-application using the caffsim R package. A) a scatter plot of Cmax according to body weight, B) a scatter plot of AUCinf according to body weight, C) a concentration-time plot of single dose, and D) concentration-time plots and box-whisker plot of Cmax opened in mobile web-browsers (Abbreviation: Cmax, Maximal plasma concentration; AUCinf; area under the curve infinity).

  • Figure 5 EDISON Science App web-application using the caffsim R package. A) An input-deck editor, and B) HTML report containing various information regarding simulation runs.


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