J Korean Soc Microbiol.  1998 Aug;33(4):343-352.

Characterization and Sequence Analysis of Helicobacter pylori Cryptic Plasmid (pHP489)

• Cho MJ
• Song JY
• Choi YJ
• Lee WK
• Baik SC
• Ryu BD
• Choi SH
• Jeon YS
• Lee IG
• Rhee KH

Abstract

The DNA sequence of a plasmid named pHP489 of Helicobacter pylori strain 489 was determined and analyzed to characterize its replication apparatus. The pHP489 plasmid consisted of 1,222 bp and had an overall G+C content of 33.1%. An ORF was predicted to encode the putative protein of 239 amino acid residues (28 kDa). A putative ribosomal binding site and a potential terminator sequence are located upstream and downstream of the ORF, respectively. However, the consensus sequence for a promoter in upstream of ORF was not found. A potential dna A box was found at 317 nt upstream of a start codon and followed by two-57 bp directed repeats and an inverted repeat. The DNA homology was found in the regions of less than 90 bp among pHPK255, pHPM180, and pHel1 of other H. pylori plasmids and Mycoplasma mycoides plasmids. pHP489K that was produced by pHP489 sequence and C. jejuni derived aph(3')-III, was transformed to various H. pylori isolates and were stably maintained in the H. pylori host without the addition of selective antibiotics for the 30-times subcultues. The plasmic vector, in which the ORF region of pHP489 DNA was deleted, could be transformed into H. pylori. However, the plasmid vector, whose the direct repeats region of pHP489 DNA was deleted, failed to be transformed. The direct repeats region of pHP489 DNA was confirmed to be bound with cytosolic factors of H. pylori. These results showed that the direct repeats region of pHP489 DNA is an essential apparatus by which the plasmid could be replicacted in H. pylori. And pHP489 plasmid was supposed to be replicated by host factors rather than plasmic-encoded factors.

Keyword

H. pylori; Cryptic plasmid; Nucleotide sequence; Sequence analysis

MeSH Terms

Animals
Anti-Bacterial Agents
Base Composition
Base Sequence
Binding Sites
Codon, Initiator
Consensus Sequence
Cytosol
DNA
Ecthyma, Contagious
Helicobacter pylori*
Helicobacter*
Mycoplasma mycoides
Plasmids*
Repetitive Sequences, Nucleic Acid
Sequence Analysis*
Terminator Regions, Genetic
Anti-Bacterial Agents
Codon, Initiator
DNA