Korean J Lab Med.  2011 Oct;31(4):265-270. 10.3343/kjlm.2011.31.4.265.

Antimicrobial Resistance Determinants in Imipenem-nonsusceptible Acinetobacter calcoaceticus-baumannii Complex Isolated in Daejeon, Korea

Affiliations
  • 1Department of Biomedical Laboratory Science, Far East University, Eumseong, Korea.
  • 2Department of Laboratory Medicine, College of Medicine, Chungnam National University, Daejeon, Korea. shkoo@cnu.ac.kr

Abstract

BACKGROUND
Members of the Acinetobacter calcoaceticus-baumannii (Acb) complex are important opportunistic bacterial pathogens and present significant therapeutic challenges in the treatment of nosocomial infections. In the present study, we investigated the integrons and various genes involved in resistance to carbapenems, aminoglycosides, and fluoroquinolones in 56 imipenem-nonsusceptible Acb complex isolates.
METHODS
This study included 44 imipenem-nonsusceptible A. baumannii, 10 Acinetobacter genomic species 3, and 2 Acinetobacter genomic species 13TU strains isolated in Daejeon, Korea. The minimum inhibitory concentrations (MICs) were determined by Etest. PCR and DNA sequencing were used to identify the genes that potentially contribute to each resistance phenotype.
RESULTS
All A. baumannii isolates harbored the blaOXA-51-like gene, and 21 isolates (47.7%) co-produced OXA-23. However, isolates of Acinetobacter genomic species 3 and 13TU only contained blaIMP-1 or blaVIM-2. Most Acb complex isolates (94.6%) harbored class 1 integrons, armA, and/or aminoglycoside-modifying enzymes (AMEs). Of particular note was the fact that armA and aph(3')-Ia were only detected in A. baumannii isolates, which were highly resistant to amikacin (MIC50> or =256) and gentamicin (MIC50> or =1,024). In all 44 A. baumannii isolates, resistance to fluoroquinolones was conferred by sense mutations in the gyrA and parC. However, sense mutations in parC were not found in Acinetobacter genomic species 3 or 13TU isolates.
CONCLUSIONS
Several differences in carbapenem, aminoglycoside, and fluoroquinolone resistance gene content were detected among Acb complex isolates. However, most Acb complex isolates (87.5%) possessed integrons, carbapenemases, AMEs, and mutations in gyrA. The co-occurrence of several resistance determinants may present a significant threat.

Keyword

Acinetobacter baumannii; Acinetobacter genomic species; Carbapenemase; Integron

MeSH Terms

Acinetobacter Infections/microbiology
Acinetobacter baumannii/*genetics/isolation & purification
Anti-Bacterial Agents/*pharmacology
Bacterial Proteins/genetics
DNA Gyrase/genetics
DNA, Bacterial/chemistry/genetics
Drug Resistance, Bacterial/*genetics
Humans
Imipenem/*pharmacology
Integrons/genetics
Methyltransferases/genetics
Microbial Sensitivity Tests
Mutation
Polymerase Chain Reaction
Republic of Korea
Sequence Analysis, DNA
beta-Lactamases/biosynthesis/genetics

Figure

  • Fig. 1 Schematic representation of gene cassette structures located in the class 1 integron isolated from Acinetobacter calcoaceticus-baumannii complex isolates. The horizontal arrows indicate the translation orientation of the genes.

  • Fig. 2 Repetitive extragenic palindromic (REP)-PCR patterns of genomic DNA from imipenem-nonsusceptible Acinetobacter calcoaceticus-baumannii complex isolates. Lane M, 1-kb DNA size marker; Ab, Acinetobacter baumannii; Ag, Acinetobacter genomic species 3.


Reference

1. Bergogne-Bérézin E. Acinetobacter spp. as nosocomial pathogens: microbiological, clinical, and epidemiological features. Clin Microbiol Rev. 1996; 9:148–165. PMID: 8964033.
2. La Scola B, Gundi VA, Khamis A, Raoult D. Sequencing of the rpoB gene and flanking spacers for molecular identification of Acinetobacter species. J Clin Microbiol. 2006; 44:827–832. PMID: 16517861.
3. Gerner-Smidt P, Tjernberg I. Acinetobacter in Denmark: II. Molecular studies of the Acinetobacter calcoaceticus-Acinetobacter baumannii complex. APMIS. 1993; 101:826–832. PMID: 8286091.
4. van den Broek PJ, van der Reijden TJ, van Strijen E, Helmig-Schurter AV, Bernards AT, Dijkshoorn L. Endemic and epidemic Acinetobacter species in a university hospital: an 8-year survey. J Clin Microbiol. 2009; 47:3593–3599. PMID: 19794057.
5. Gootz TD, Marra A. Acinetobacter baumannii: an emerging multidrug-resistant threat. Expert Rev Anti Infect Ther. 2008; 6:309–325. PMID: 18588496.
6. Poirel L, Nordmann P. Carbapenem resistance in Acinetobacter baumannii mechanisms and epidemiology. Clin Microbiol Infect. 2006; 12:826–836. PMID: 16882287.
7. Poirel L, Pitout JD, Nordmann P. Carbapenemases: molecular diversity and clinical consequences. Future Microbiol. 2007; 2:501–512. PMID: 17927473.
Article
8. Mugnier PD, Poirel L, Nordmann P. Functional analysis of insertion sequence ISAba1, responsible for genomic plasticity of Acinetobacter baumannii. J Bacteriol. 2009; 191:2414–2418. PMID: 19136598.
9. Petersen A, Guardabassi L, Dalsgaard A, Olsen JE. Class I integrons containing a dhfrI trimethoprim resistance gene cassette in aquatic Acinetobacter spp. FEMS Microbiol Lett. 2000; 182:73–76. PMID: 10612734.
10. Nemec A, Dolzani L, Brisse S, van den Broek P, Dijkshoorn L. Diversity of aminoglycoside-resistance genes and their association with class 1 integrons among strains of pan-European Acinetobacter baumannii clones. J Med Microbiol. 2004; 53:1233–1240. PMID: 15585503.
11. Cho YJ, Moon DC, Jin JS, Choi CH, Lee YC, Lee JC. Genetic basis of resistance to aminoglycosides in Acinetobacter spp. and spread of armA in Acinetobacter baumannii sequence group 1 in Korean hospitals. Diagn Microbiol Infect Dis. 2009; 64:185–190. PMID: 19361944.
12. Vila J, Ruiz J, Goñi P, Marcos A, Jimenez de Anta T. Mutation in the gyrA gene of quinolone-resistant clinical isolates of Acinetobacter baumannii. Antimicrob Agents Chemother. 1995; 39:1201–1203. PMID: 7625818.
13. Gundi VA, Dijkshoorn L, Burignat S, Raoult D, La Scola B. Validation of partial rpoB gene sequence analysis for the identification of clinically important and emerging Acinetobacter species. Microbiology. 2009; 155:2333–2341. PMID: 19389786.
14. Clinical and Laboratory Standards Institute. M100-S20. Performance standards for antimicrobial susceptibility testing: twentieth informational supplement. 2010. Wayne, PA: Clinical and Laboratory Standards Institute.
15. Koo SH, Kwon KC, Cho HH, Sung JY. Genetic basis of multidrug-resistant Acinetobacter baumannii clinical isolates from three university hospitals in Chungcheong province, Korea. Korean J Lab Med. 2010; 30:498–506. PMID: 20890082.
16. Akers KS, Chaney C, Barsoumian A, Beckius M, Zera W, Yu X, et al. Aminoglycoside resistance and susceptibility testing errors in Acinetobacter baumannii-calcoaceticus complex. J Clin Microbiol. 2010; 48:1132–1138. PMID: 20107089.
17. Bogaerts P, Galimand M, Bauraing C, Deplano A, Vanhoof R, De Mendonca R, et al. Emergence of ArmA and RmtB aminoglycoside resistance 16S rRNA methylases in Belgium. J Antimicrob Chemother. 2007; 59:459–464. PMID: 17224412.
18. Mendes RE, Kiyota KA, Monteiro J, Castanheira M, Andrade SS, Gales AC, et al. Rapid detection and identification of metallo-β-lactamase-encoding genes by multiplex real-time PCR assay and melt curve analysis. J Clin Microbiol. 2007; 45:544–547. PMID: 17093019.
Article
19. Shin SY, Kwon KC, Park JW, Song JH, Ko YH, Sung JY, et al. Characteristics of aac(6')-Ib-cr gene in extended-spectrum β-lactamase-producing Escherichia coli and Klebsiella pneumoniae isolated from Chungnam area. Korean J Lab Med. 2009; 29:541–550. PMID: 20046086.
20. Bou G, Cerveró G, Domínguez MA, Quereda C, Martínez-Beltrán J. PCR-based DNA fingerprinting (REP-PCR, AP-PCR) and pulsed-field gel electrophoresis characterization of a nosocomial outbreak caused by imipenem- and meropenem-resistant Acinetobacter baumannii. Clin Microbiol Infect. 2000; 6:635–643. PMID: 11284921.
21. Lee JH, Choi CH, Kang HY, Lee JY, Kim J, Lee YC, et al. Differences in phenotypic and genotypic traits against antimicrobial agents between Acinetobacter baumannii and Acinetobacter genomic species 13TU. J Antimicrob Chemother. 2007; 59:633–639. PMID: 17339277.
22. Lee K, Kim MN, Choi TY, Cho SE, Lee S, Whang DH, et al. Wide dissemination of OXA-type carbapenemases in clinical Acinetobacter spp. isolates from South Korea. Int J Antimicrob Agents. 2009; 33:520–524. PMID: 19091520.
23. Turton JF, Ward ME, Woodford N, Kaufmann ME, Pike R, Livermore DM, et al. The role of ISAba1 in expression of OXA carbapenemase genes in Acinetobacter baumannii. FEMS Microbiol Lett. 2006; 258:72–77. PMID: 16630258.
24. Sung JY, Kwon KC, Park JW, Kim YS, Kim JM, Shin KS, et al. Dissemination of IMP-1 and OXA type β-lactamase in carbapenem-resistant Acinetobacter baumannii. Korean J Lab Med. 2008; 28:16–23. PMID: 18309251.
25. Yum JH, Yi K, Lee H, Yong D, Lee K, Kim JM, et al. Molecular characterization of metallo-β-lactamase-producing Acinetobacter baumannii and Acinetobacter genomospecies 3 from Korea: identification of two new integrons carrying the bla(VIM-2) gene cassettes. J Antimicrob Chemother. 2002; 49:837–840. PMID: 12003980.
26. Zhou Y, Yu H, Guo Q, Xu X, Ye X, Wu S, et al. Distribution of 16S rRNA methylases among different species of Gram-negative bacilli with high-level resistance to aminoglycosides. Eur J Clin Microbiol Infect Dis. 2010; 29:1349–1353. PMID: 20614151.
Article
27. Akasaka T, Tanaka M, Yamaguchi A, Sato K. Type II topoisomerase mutations in fluoroquinolone-resistant clinical strains of Pseudomonas aeruginosa isolated in 1998 and 1999: role of target enzyme in mechanism of fluoroquinolone resistance. Antimicrob Agents Chemother. 2001; 45:2263–2268. PMID: 11451683.
28. Valentine SC, Contreras D, Tan S, Real LJ, Chu S, Xu HH. Phenotypic and molecular characterization of Acinetobacter baumannii clinical isolates from nosocomial outbreaks in Los Angeles County, California. J Clin Microbiol. 2008; 46:2499–2507. PMID: 18524965.
Full Text Links
  • KJLM
Actions
Cited
CITED
export Copy
Close
Share
  • Twitter
  • Facebook
Similar articles
Copyright © 2024 by Korean Association of Medical Journal Editors. All rights reserved.     E-mail: koreamed@kamje.or.kr