- New Approaches to Functional Process Discovery in HPV 16-Associated Cervical Cancer Cells by Gene Ontology
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Kim YW, Suh MJ, Bae JS, Bae SM, Yoon JH, Hur SY, Kim JH, Ro DY, Lee JM, Namkoong S, Kim CK, Ahn WS
- KMID: 1972898
- Cancer Res Treat.
- 2003 Aug;35(4):304-313.
No abstract available. -
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- An Ontology-Based GIS for Genomic Data Management of Rumen Microbes
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Jelokhani-Niaraki S, Tahmoorespur M, Minuchehr , Nassiri MR
- KMID: 2053331
- Genomics Inform.
- 2015 Mar;13(1):7-14.
- doi: 10.5808/GI.2015.13.1.7
During recent years, there has been exponential growth in biological information. With the emergence of large datasets in biology, life scientists are encountering bottlenecks in handling the biological data. This... -
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- Estimation of the Genetic Substitution Rate of Hanwoo and Holstein Cattle Using Whole Genome Sequencing Data
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Lee YS, Shin D
- KMID: 2413247
- Genomics Inform.
- 2018 Mar;16(1):14-20.
- doi: 10.5808/GI.2018.16.1.14
Despite the importance of mutation rate, some difficulties exist in estimating it. Next-generation sequencing (NGS) data yields large numbers of single-nucleotide polymorphisms, which can make it feasible to estimate substitution... -
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- GSnet: An Integrated Tool for Gene Set Analysis and Visualization
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Choi YJ, Woo HG, Yu U
- KMID: 2166269
- Genomics Inform.
- 2007 Sep;5(3):133-136.
The Gene Set network viewer (GSnet) visualizes the functional enrichment of a given gene set with a protein interaction network and is implemented as a plug-in for the Cytoscape platform.... -
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- FCAnalyzer: A Functional Clustering Analysis Tool for Predicted Transcription Regulatory Elements and Gene Ontology Terms
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Kim SB, Ryu GM, Kim YJ, Heo JY, Park C, Oh BS, Kim HL, Kimm KC, Kim KW, Kim YY
- KMID: 2166249
- Genomics Inform.
- 2007 Mar;5(1):10-18.
Numerous studies have reported that genes with similar expression patterns are co-regulated. From gene expression data, we have assumed that genes having similar expression pattern would share similar transcription factor... -
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- Identification of Gene Expression and Gene Ontology Classification by Differential Display RT-PCR in Human Cervical Squamous Cell Carcinoma
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Seo MJ, Bae SM, Park KM, Kim BH, Kim YW, Seo KY, Seo KA, Kim YW, Hur SY, Ro DY, Lee JM, Namkoong S, Kim CK, Ahn WS
- KMID: 2272306
- Korean J Obstet Gynecol.
- 2004 Apr;47(4):684-694.
OBJECTIVE: The molecular pathology of cervical cancer associated with human papillomavirus infection is presently unclear. In an effort to clarify the multiple interactions of a number of genes involved in... -
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- Improved Algorithms for the Identification of Yeast Proteins and Significant Transcription Factor and Motif Analysis
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Lee SW, Hong SE, Lee KY, Choi DI, Chung HY, Hur CG
- KMID: 2166220
- Genomics Inform.
- 2006 Jun;4(2):87-93.
With the rapid development of MS technologiesy, the demands for a more sophisticated MS interpretation algorithm haves grown as well. We have developed a new protein fingerprinting method using a... -
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- Analysis of Disease Progression-Associated Gene Expression Profile in Fibrillin-1 Mutant Mice: New Insight into Molecular Pathogenesis of Marfan Syndrome
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Kim KL, Choi C, Suh W
- KMID: 2170654
- Biomol Ther.
- 2014 Mar;22(2):143-148.
Marfan syndrome (MFS) is a dominantly inherited connective tissue disorder caused by mutations in the gene encoding fibrillin-1 (FBN1) and is characterized by aortic dilatation and dissection, which is the... -
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- Transcriptome Analysis Identifies an Attenuated Local Immune Response in Invasive Nonfunctioning Pituitary Adenomas
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Kim YH, Kim JH
- KMID: 2458634
- Endocrinol Metab.
- 2019 Sep;34(3):314-322.
- doi: 10.3803/EnM.2019.34.3.314
BACKGROUND: Invasive nonfunctioning pituitary adenomas (NFPAs) remain challenging due to their high complication rate and poor prognosis. We aimed to identify the distinctive molecular signatures of invasive NFPAs, compared with... -
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- Differential Gene Expression in Placenta of Term Pregnant Women with and without Labor using cDNA Microarray
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Kim A, Kim OK, Seo MW, Yang DE, Ahn HY, Park IY, Lee GS, Shin JC
- KMID: 2280612
- Korean J Perinatol.
- 2007 Dec;18(4):370-377.
OBJECTIVE:cDNA microarray technology was used to comprehensively analyze the gene expression in the placenta of term women with labor compared to without labor. METHODS:Placental tissue was obtained from patients in spontaneous... -
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- Differential Gene Expression Common to Acquired and Intrinsic Resistance to BRAF Inhibitor Revealed by RNA-Seq Analysis
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Ahn JH, Hwang SH, Cho HS, Lee M
- KMID: 2447857
- Biomol Ther.
- 2019 May;27(3):302-310.
- doi: 10.4062/biomolther.2018.133
Melanoma cells have been shown to respond to BRAF inhibitors; however, intrinsic and acquired resistance limits their clinical application. In this study, we performed RNA-Seq analysis with BRAF inhibitor-sensitive (A375P)... -
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- In silico approach to calculate the transcript capacity
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Lee YS, Won KH, Oh JD, Shin D
- KMID: 2462045
- Genomics Inform.
- 2019 Sep;17(3):e31.
- doi: 10.5808/GI.2019.17.3.e31
We sought the novel concept, transcript capacity (TC) and analyzed TC. Our approach to estimate TC was through an in silico method. TC refers to the capacity that a transcript... -
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- Exploring the Key Genes and Pathways of Osteoarthritis in Knee Cartilage in a Rat Model Using Gene Expression Profiling
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Ren YM, Zhao X, Yang T, Duan YH, Sun YB, Zhao WJ, Tian MQ
- KMID: 2415535
- Yonsei Med J.
- 2018 Aug;59(6):760-768.
- doi: 10.3349/ymj.2018.59.6.760
PURPOSE: To compare differentially expressed genes (DEGs) mediating osteoarthritis (OA) in knee cartilage and in normal knee cartilage in a rat model of OA and to identify their impact on... -
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- Human Embryonic Stem Cell Derived from Early Stage Fertilized Ovum: Non Immunogenic and Universal, Neuronal and Non-neuronal Cell Lines
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Shroff G, Srivastav , Shroff R
- KMID: 2413506
- Int J Stem Cells.
- 2018 Jun;11(1):105-110.
- doi: 10.15283/ijsc17064
BACKGROUND: Human embryonic stem cells (hESCs) have the potential to treat various human disorders currently labeled as incurable and/or terminal illness. However, the fear that the patients' immune system would... -
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- Proteomic Classification and Identification of Proteins Related to Tissue Healing of Platelet-Rich Plasma
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Lee HW, Choi KH, Kim JY, Kim KO, Haotian B, Yuxuan L, Noh KC
- KMID: 2470060
- Clin Orthop Surg.
- 2020 Mar;12(1):120-129.
- doi: 10.4055/cios.2020.12.1.120
BACKGROUND: Platelet-rich plasma (PRP) is a plasma component of autologous blood containing a high concentration of platelets. PRP is used to promote healing of damaged tissues. However, there are not... -
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- Comparison of As2O3 and As4O6 in the Detection of SiHa Cervical Cancer Cell Growth Inhibition Pathway
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Kim YW, Bae SM, Lee KH, Lee JM, Namkoong S, Lee IP, Kim CK, Seo JS, Sin JI, Kim YW, Ahn WS
- KMID: 2166140
- Cancer Res Treat.
- 2004 Aug;36(4):255-262.
PURPOSE: An arsenical compound, As2O3, has been reported to be effective for treating acute leukemia and inducing apoptosis in many different tumor cells. In this study, the ability of As4O6... -
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- Identification of the Genes Involved in the Fruiting Body Production and Cordycepin Formation of Cordyceps militaris Fungus
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Zheng ZL, Qiu XH, Han RC
- KMID: 2312791
- Mycobiology.
- 2015 Mar;43(1):37-42.
- doi: 10.5941/MYCO.2015.43.1.37
A mutant library of Cordyceps militaris was constructed by improved Agrobacterium tumefaciens-mediated transformation and screened for degradation features. Six mutants with altered characters in in vitro and in vivo fruiting... -
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- Expression Profiling of the Cellular Processes in Uterine Leiomyomas: Omic Approaches and IGF-2 Association with Leiomyosarcomas
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Bae SM, Kim YW, Lee JM, Namkoong S, Kim CK, Ahn WS
- KMID: 1807304
- Cancer Res Treat.
- 2004 Feb;36(1):31-42.
PURPOSE: This study utilized both cDNA microarray and 2D protein gel electrophoresis technology to investigate the multiple interactions of the genes and proteins involved in the pathophysiology of uterine leiomyomas.... -
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- Genome-Wide Association Studies Associated with Backfat Thickness in Landrace and Yorkshire Pigs
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Lee YS, Shin D
- KMID: 2422813
- Genomics Inform.
- 2018 Sep;16(3):59-64.
- doi: 10.5808/GI.2018.16.3.59
Although pork quality traits are important commercially, genome-wide association studies (GWASs) have not well considered Landrace and Yorkshire pigs worldwide. Landrace and Yorkshire pigs are important pork-providing breeds. Although quantitative... -
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- RGISS: Rice (Oryza sativa L. ssp. japonica) Genome Information Service System
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Lee D, Seo H, Hahn JH, Kong EB, Park K
- KMID: 2166285
- Genomics Inform.
- 2007 Dec;5(4):194-195.
We have constructed the Rice Genome Information Service System (RGISS), which is an information service system of the Oryza sativa L. ssp. japonica (rice) genome, using the released version of... -
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