Genomics Inform.  2022 Mar;20(1):e9. 10.5808/gi.21060.

Exploration of errors in variance caused by using the first-order approximation in Mendelian randomization

• Kim H
• Kim K
• Han B

• KMID: 2527952
• DOI: http://doi.org/10.5808/gi.21060

Abstract

Mendelian randomization (MR) uses genetic variation as a natural experiment to investigate the causal effects of modifiable risk factors (exposures) on outcomes. Two-sample Mendelian randomization (2SMR) is widely used to measure causal effects between exposures and outcomes via genome-wide association studies. 2SMR can increase statistical power by utilizing summary statistics from large consortia such as the UK Biobank. However, the first-order term approximation of standard error is commonly used when applying 2SMR. This approximation can underestimate the variance of causal effects in MR, which can lead to an increased false-positive rate. An alternative is to use the second-order approximation of the standard error, which can considerably correct for the deviation of the first-order approximation. In this study, we simulated MR to show the degree to which the first-order approximation underestimates the variance. We show that depending on the specific situation, the first-order approximation can underestimate the variance almost by half when compared to the true variance, whereas the second-order approximation is robust and accurate.

Keyword

computer simulation; delta method; Mendelian randomization analysis