Ann Pediatr Endocrinol Metab.  2020 Mar;25(1):63-67. 10.6065/apem.2020.25.1.63.

Identification of a novel variant in the PHEX gene using targeted gene panel sequencing in a 24-month-old boy with hypophosphatemic rickets

Affiliations
  • 1Department of Pediatrics, Pusan National University Hospital, Pusan National University School of Medicine, Busan, Korea
  • 2Green Cross Genome, Yongin, Korea

Abstract

Familial hypophosphatemic rickets (FHR) is a disorder characterized by phosphate wasting and hypophosphatemia due to defects in renal phosphate transport regulation. There are 4 known inherited forms of FHR that differ in their molecular causes. Very few studies have been conducted that focused on the molecular analysis of FHR in Koreans. Eighteen mutations of the PHEX gene have been identified to this date in Korea. Herein, we report the clinical case of a 24-month-old boy presenting with bowed legs and short stature. The biochemical profile showed hypophosphatemia with decreased tubular reabsorption of phosphate. Several family members were identified with short stature and genu varum. Therefore, he was diagnosed with FHR. To identify the molecular causes of FHR, we performed targeted gene panel sequencing and found a novel hemizygous missense variant, c.1949T>C (p.Leu650Pro), in the PHEX gene. This variant was also detected in the boy’s mother who exhibited genu varum and short stature.

Keyword

Hypophosphatemic rickets; Mutation; Targeted gene panel sequencing

Figure

  • Fig. 1. (A) The patient’s photograph taken at the age of 2 years shows bowed legs. (B) A radiograph of the lower legs reveals diffuse bone contour changes as well as fraying and widening of the distal femoral metaphysis with varus deformity.

  • Fig. 2. Pedigree of the proband is consistent with a dominant mode of inheritance. The black symbols represent the affected individuals with short stature and genu varum. The asterisks (*) indicate the individuals who had undergone surgical correction for genu varum.

  • Fig. 3. Partial genomic DNA sequence of the patient and patient’s mother shows the c.1949T>C (p.Leu650Pro) variant in the PHEX gene.


Reference

References

1. Jan de Beur SM, Levine MA. Molecular pathogenesis of hypophosphatemic rickets. J Clin Endocrinol Metab. 2002; 87:2467–73.
Article
2. A gene (PEX) with homologies to endopeptidases is mutated in patients with X-linked hypophosphatemic rickets. The HYP Consortium. Nat Genet. 1995; 11:130–6.
3. ADHR Consortium. Autosomal dominant hypophosphataemic rickets is associated with mutations in FGF23. Nat Genet. 2000; 26:345–8.
4. Lorenz-Depiereux B, Bastepe M, Benet-Pagès A, Amyere M, Wagenstaller J, Müller-Barth U, et al. DMP1 mutations in autosomal recessive hypophosphatemia implicate a bone matrix protein in the regulation of phosphate homeostasis. Nat Genet. 2006; 38:1248–50.
Article
5. Lorenz-Depiereux B, Schnabel D, Tiosano D, Häusler G, Strom TM. Loss-of-function ENPP1 mutations cause both generalized arterial calcification of infancy and autosomalrecessive hypophosphatemic rickets. Am J Hum Genet. 2010; 86:267–72.
Article
6. Strom TM, Jüppner H. PHEX, FGF23, DMP1 and beyond. Curr Opin Nephrol Hypertens. 2008; 17:357–62.
Article
7. Cho HY, Lee BH, Kang JH, Ha IS, Cheong HI, Choi Y. A clinical and molecular genetic study of hypophosphatemic rickets in children. Pediatr Res. 2005; 58:329–33.
Article
8. Song HR, Park JW, Cho DY, Yang JH, Yoon HR, Jung SC. PHEX gene mutations and genotype-phenotype analysis of Korean patients with hypophosphatemic rickets. J Korean Med Sci. 2007; 22:981–6.
Article
9. Kim J, Yang KH, Nam JS, Choi JR, Song J, Chang M, et al. A novel PHEX mutation in a Korean patient with sporadic hypophosphatemic rickets. Ann Clin Lab Sci. 2009; 39:182–7.
10. Cheon CK, Lee HS, Kim SY, Kwak MJ, Kim GH, Yoo HW. A novel de novo mutation within PHEX gene in a young girl with hypophosphatemic rickets and review of literature. Ann Pediatr Endocrinol Metab. 2014; 19:36–41.
Article
11. Kang YE, Hong JH, Kim J, Joung KH, Kim HJ, Ku BJ, et al. A novel PHEX gene mutation in a patient with sporadic hypophosphatemic rickets. Endocrinol Metab (Seoul). 2014; 29:195–201.
Article
12. Yang M, Kim J, Yang A, Jang J, Jeon TY, Cho SY, et al. A novel de novo mosaic mutation in PHEX in a Korean patient with hypophosphatemic rickets. Ann Pediatr Endocrinol Metab. 2018; 23:229–34.
Article
13. Ng PC, Henikoff S. SIFT: Predicting amino acid changes that affect protein function. Nucleic Acids Res. 2003; 31:3812–4.
Article
14. McKenna A, Hanna M, Banks E, Sivachenko A, Cibulskis K, Kernytsky A, et al. The genome analysis toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. Genome Res. 2010; 20:1297–303.
Article
15. Schwarz JM, Cooper DN, Schuelke M, Seelow D. MutationTaster2: mutation prediction for the deep sequencing age. Nat Methods. 2014; 11:361–2.
Article
16. Holm IA, Nelson AE, Robinson BG, Mason RS, Marsh DJ, Cowell CT, et al. Mutational analysis and genotypephenotype correlation of the PHEX gene in X-linked hypophosphatemic rickets. J Clin Endocrinol Metab. 2001; 86:3889–99.
Article
17. Sabbagh Y, Boileau G, DesGroseillers L, Tenenhouse HS. Disease-causing missense mutations in the PHEX gene interfere with membrane targeting of the recombinant protein. Hum Mol Genet. 2001; 10:1539–46.
Article
18. Lee JY, Imel EA. The changing face of hypophosphatemic disorders in the FGF-23 era. Pediatr Endocrinol Rev. 2013; 10 Suppl 2:367–79.
19. Linglart A, Biosse-Duplan M, Briot K, Chaussain C, Esterle L, Guillaume-Czitrom S, et al. Therapeutic management of hypophosphatemic rickets from infancy to adulthood. Endocr Connect. 2014; 3:R13–30.
Article
20. Whyte MP, Carpenter TO, Gottesman GS, Mao M, Skrinar A, San Martin J, et al. Efficacy and safety of burosumab in children aged 1-4 years with X-linked hypophosphataemia: a multicentre, open-label, phase 2 trial. Lancet Diabetes Endocrinol. 2019; 7:189–99.
Article
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