- Editor's Introduction to This Issue
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Chung YJ
- KMID: 2391487
- Genomics Inform.
- 2014 Dec;12(4):135-135.
- doi: 10.5808/GI.2014.12.4.135
No abstract available. -
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- Genome-Wide Association Study of Hepatitis in Korean Populations
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Hong Y, Oh S
- KMID: 2391497
- Genomics Inform.
- 2014 Dec;12(4):203-207.
- doi: 10.5808/GI.2014.12.4.203
Hepatitis is a common and serious disease for the Korean population. It is caused by a virus, the A and B types of which are plentiful in Koreans. In this... -
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- Reflections on the US FDA's Warning on Direct-to-Consumer Genetic Testing
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Yim SH, Chung YJ
- KMID: 2391490
- Genomics Inform.
- 2014 Dec;12(4):151-155.
- doi: 10.5808/GI.2014.12.4.151
In November 2013, the US Food and Drug Administration (FDA) sent a warning letter to 23andMe, Inc. and ordered the company to discontinue marketing of the 23andMe Personal Genome Service... -
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- In silico Identification of SFRP1 as a Hypermethylated Gene in Colorectal Cancers
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Kim J, Kim S
- KMID: 2391493
- Genomics Inform.
- 2014 Dec;12(4):171-180.
- doi: 10.5808/GI.2014.12.4.171
Aberrant DNA methylation, as an epigenetic marker of cancer, influences tumor development and progression. We downloaded publicly available DNA methylation and gene expression datasets of matched cancer and normal pairs... -
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- Replication of Interactions between Genome-Wide Genetic Variants and Body Mass Index in Fasting Glucose and Insulin Levels
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Hong KW, Chung M, Cho SB
- KMID: 2391502
- Genomics Inform.
- 2014 Dec;12(4):236-239.
- doi: 10.5808/GI.2014.12.4.236
The genetic regulation of glucose and insulin levels might be modified by adiposity. With regard to the genetic factors that are altered by adiposity, a large meta-analysis on the interactions... -
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- The Usage of an SNP-SNP Relationship Matrix for Best Linear Unbiased Prediction (BLUP) Analysis Using a Community-Based Cohort Study
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Lee YS, Kim HJ, Cho S, Kim H
- KMID: 2391505
- Genomics Inform.
- 2014 Dec;12(4):254-260.
- doi: 10.5808/GI.2014.12.4.254
Best linear unbiased prediction (BLUP) has been used to estimate the fixed effects and random effects of complex traits. Traditionally, genomic relationship matrix-based (GRM) and random marker-based BLUP analyses are... -
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- Effective Population Size of Korean Populations
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Park L
- KMID: 2391498
- Genomics Inform.
- 2014 Dec;12(4):208-215.
- doi: 10.5808/GI.2014.12.4.208
Recently, new methods have been developed for estimating the current and recent changes in effective population sizes. Based on the methods, the effective population sizes of Korean populations were estimated... -
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- Relevance Epistasis Network of Gastritis for Intra-chromosomes in the Korea Associated Resource (KARE) Cohort Study
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Jeong HH, Sohn KA
- KMID: 2391499
- Genomics Inform.
- 2014 Dec;12(4):216-224.
- doi: 10.5808/GI.2014.12.4.216
Gastritis is a common but a serious disease with a potential risk of developing carcinoma. Helicobacter pylori infection is reported as the most common cause of gastritis, but other genetic... -
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- Genome-Wide Association Study Identifies Candidate Loci Associated with Platelet Count in Koreans
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Oh JH, Kim YK, Moon S, Kim YJ, Kim BJ
- KMID: 2391500
- Genomics Inform.
- 2014 Dec;12(4):225-230.
- doi: 10.5808/GI.2014.12.4.225
Platelets are derived from the fragments that are formed from the cytoplasm of bone marrow megakaryocytes-small irregularly shaped anuclear cells. Platelets respond to vascular damage, contracts blood vessels, and attaches... -
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- Genome-Wide Identification and Classification of MicroRNAs Derived from Repetitive Elements
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Gim JA, Ha HS, Ahn K, Kim DS, Kim HS
- KMID: 2391506
- Genomics Inform.
- 2014 Dec;12(4):261-267.
- doi: 10.5808/GI.2014.12.4.261
MicroRNAs (miRNAs) are known for their role in mRNA silencing via interference pathways. Repetitive elements (REs) share several characteristics with endogenous precursor miRNAs. In this study, 406 previously identified and... -
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- A Review of Three Different Studies on Hidden Markov Models for Epigenetic Problems: A Computational Perspective
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Lee KE, Park HS
- KMID: 2391489
- Genomics Inform.
- 2014 Dec;12(4):145-150.
- doi: 10.5808/GI.2014.12.4.145
Recent technical advances, such as chromatin immunoprecipitation combined with DNA microarrays (ChIp-chip) and chromatin immunoprecipitation-sequencing (ChIP-seq), have generated large quantities of high-throughput data. Considering that epigenomic datasets are arranged over... -
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- Review on Molecular and Chemopreventive Potential of Nimbolide in Cancer
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Elumalai P, Arunakaran J
- KMID: 2391491
- Genomics Inform.
- 2014 Dec;12(4):156-164.
- doi: 10.5808/GI.2014.12.4.156
Cancer is the most dreaded disease in human and also major health problem worldwide. Despite its high occurrence, the exact molecular mechanisms of the development and progression are not fully... -
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- Genome-Wide Association Study of Metabolic Syndrome in Koreans
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Jeong SW, Chung M, Park SJ, Cho SB, Hong KW
- KMID: 2391495
- Genomics Inform.
- 2014 Dec;12(4):187-194.
- doi: 10.5808/GI.2014.12.4.187
Metabolic syndrome (METS) is a disorder of energy utilization and storage and increases the risk of developing cardiovascular disease and diabetes. To identify the genetic risk factors of METS, we... -
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- MAP: Mutation Arranger for Defining Phenotype-Related Single-Nucleotide Variant
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Baek IP, Jeong YB, Jung SH, Chung YJ
- KMID: 2391510
- Genomics Inform.
- 2014 Dec;12(4):289-292.
- doi: 10.5808/GI.2014.12.4.289
Next-generation sequencing (NGS) is widely used to identify the causative mutations underlying diverse human diseases, including cancers, which can be useful for discovering the diagnostic and therapeutic targets. Currently, a... -
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- Genome Architecture and Its Roles in Human Copy Number Variation
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Chen L, Zhou W, Zhang L, Zhang F
- KMID: 2391488
- Genomics Inform.
- 2014 Dec;12(4):136-144.
- doi: 10.5808/GI.2014.12.4.136
Besides single-nucleotide variants in the human genome, large-scale genomic variants, such as copy number variations (CNVs), are being increasingly discovered as a genetic source of human diversity and the pathogenic... -
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- Short Reads Phasing to Construct Haplotypes in Genomic Regions That Are Associated with Body Mass Index in Korean Individuals
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Lee K, Han S, Tark Y, Kim S
- KMID: 2391492
- Genomics Inform.
- 2014 Dec;12(4):165-170.
- doi: 10.5808/GI.2014.12.4.165
Genome-wide association (GWA) studies have found many important genetic variants that affect various traits. Since these studies are useful to investigate untyped but causal variants using linkage disequilibrium (LD), it... -
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- Understanding Rifampicin Resistance in Tuberculosis through a Computational Approach
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Kumar S, Jena L
- KMID: 2391508
- Genomics Inform.
- 2014 Dec;12(4):276-282.
- doi: 10.5808/GI.2014.12.4.276
The disease tuberculosis, caused by Mycobacterium tuberculosis (MTB), remains a major cause of morbidity and mortality in developing countries. The evolution of drug-resistant tuberculosis causes a foremost threat to global... -
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- Elucidation of the Inhibitory Effect of Phytochemicals with Kir6.2 Wild-Type and Mutant Models Associated in Type-1 Diabetes through Molecular Docking Approach
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Jagadeb M, Konkimalla VB, Rath SN, Das RP
- KMID: 2391509
- Genomics Inform.
- 2014 Dec;12(4):283-288.
- doi: 10.5808/GI.2014.12.4.283
Among all serious diseases globally, diabetes (type 1 and type 2) still poses a major challenge to the world population. Several target proteins have been identified, and the etiology causing... -
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- Analysis of Gene Expression in Cyclooxygenase-2-Overexpressed Human Osteosarcoma Cell Lines
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Han JA, Kim JY, Kim JI
- KMID: 2391504
- Genomics Inform.
- 2014 Dec;12(4):247-253.
- doi: 10.5808/GI.2014.12.4.247
Osteosarcoma is the most common primary bone tumor, generally affecting young people. While the etiology of osteosarcoma has been largely unknown, recent studies have suggested that cyclooxygenase-2 (COX-2) plays a... -
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- Understanding Epistatic Interactions between Genes Targeted by Non-coding Regulatory Elements in Complex Diseases
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Sung MK, Bang H, Choi JK
- KMID: 2391494
- Genomics Inform.
- 2014 Dec;12(4):181-186.
- doi: 10.5808/GI.2014.12.4.181
Genome-wide association studies have proven the highly polygenic architecture of complex diseases or traits; therefore, single-locus-based methods are usually unable to detect all involved loci, especially when individual loci exert... -
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