Genomics Inform.
2023 Mar;21(1):e14. 10.5808/gi.22079.
PyOncoPrint: a python package for plotting OncoPrints
- Affiliations
-
- 1School of Biomedical Convergence Engineering, Pusan National University, Busan 50612, Korea
- 2Computational Oncology, Molecular Precision Oncology Program, National Center for Tumor Diseases (NCT), German Cancer Research Center (DKFZ), Heidelberg 69120, Germany
- KMID: 2543693
- DOI: http://doi.org/10.5808/gi.22079
Abstract
- OncoPrint, the plot to visualize an overview of genetic variants in sequencing data, has been widely used in the field of cancer genomics. However, still, there have been no Python libraries capable to generate OncoPrint yet, a big hassle to plot OncoPrints within Python-based genetic variants analysis pipelines. This paper introduces a new Python package PyOncoPrint, which can be easily used to plot OncoPrints in Python. The package is based on the existing widely used scientific plotting library Matplotlib, the resulting plots are easy to be adjusted for various needs.
- Full Text Links
-
- Actions
-
Cited
- CITED
-
- Close
- Share
-
- Similar articles
-
- Likelihood interval for nonlinear regression
- Mastering data visualization with Python: practical tips for researchers
- Validation of “sasLM,” an R package for linear models with type III sum of squares
- An Overview of the Package Insert and Contraindications of Filler Products in Korea
- Development of a Problem-based Learning Package for RN-BSN Students: Based on the Cases of Women during Pregnancy, Childbirth and Postpartum
