J Genet Med.  2010 Dec;7(2):111-118.

Clinical Applications of Chromosomal Microarray Analysis

• Seo EJ

Abstract

Chromosomal microarray analysis (CMA) enables the genome-wide detection of submicroscopic chromosomal imbalances with greater precision and accuracy. In most other countries, CMA is now a commonly used clinical diagnostic test, replacing conventional cytogenetics or targeted detection such as FISH or PCR-based methods. Recently, some consensus statements have proposed utilization of CMA as a first-line test in patients with multiple congenital anomalies not specific to a well-delineated genetic syndrome, developmental delay/intellectual disability, or autism spectrum disorders. CMA can be used as an adjunct to conventional cytogenetics to identify chromosomal abnormalities observed in G-banding analysis in constitutional or acquired cases, leading to a more accurate and comprehensive assessment of chromosomal aberrations. Although CMA has distinct advantages, there are several limitations, including its inability to detect balanced chromosomal rearrangements and low-level mosaicism, its interpretation of copy number variants of uncertain clinical significance, and significantly higher costs. For these reasons, CMA is not currently a replacement for conventional cytogenetics in prenatal diagnosis. In clinical applications of CMA, knowledge and experience based on genetics and cytogenetics are required for data analysis and interpretation, and appropriate follow-up with genetic counseling is recommended.

Keyword

Microarray analysis; Chromosome aberrations; Genomic structural variation; Copy number variation

MeSH Terms

Child
Autism Spectrum Disorder
Chromosome Aberrations
Coat Protein Complex I
Consensus
Cytogenetics
Diagnostic Tests, Routine
Genetic Counseling
Genomic Structural Variation
Humans
Microarray Analysis
Mosaicism
Prenatal Diagnosis
Statistics as Topic
Coat Protein Complex I