Tuberc Respir Dis.  2015 Jan;78(1):1-7. 10.4046/trd.2015.78.1.1.

The Effectiveness of Real-Time PCR Assay, Compared with Microbiologic Results for the Diagnosis of Pulmonary Tuberculosis

Affiliations
  • 1Division of Pulmonary and Critical Care Medicine, Department of Internal Medicine, Ewha Womans University School of Medicine, Seoul, Korea. hs1017@ewha.ac.kr
  • 2Department of Radiology, Ewha Womans University School of Medicine, Seoul, Korea.
  • 3Department of Laboratory Medicine, Ewha Womans University School of Medicine, Seoul, Korea.

Abstract

BACKGROUND
The incidence of tuberculosis (TB) in Korea is relatively high compared to the other Organisation for Economic Co-operation and Development (OECD) countries, with a prevalence of 71 per 100,000 in 2012, although the incidence is declining. Real-time polymerase chain reaction (PCR) has been introduced for the rapid diagnosis of TB. Recently, its advantage lies in higher sensitivity and specificity for the diagnosis of TB. This study evaluated the clinical accuracy of real-time PCR using respiratory specimens in a clinical setting.
METHODS
Real-time PCR assays using sputum specimens and/or bronchoscopic aspirates from 2,877 subjects were reviewed retrospectively; 2,859 subjects were enrolled. The diagnosis of TB was determined by positive microbiology, pathological findings of TB in the lung and pleura, or clinical suspicion of active TB following anti-TB medication for more than 6 months with a favorable response.
RESULTS
Sensitivity, specificity, and accuracy were 44%, 99%, and 86% from sputum, and 65%, 97%, and 87% from bronchoscopic aspirates, respectively. For overall respiratory specimens, sensitivity was 59%, specificity was 98%, and accuracy increased to 89%.
CONCLUSION
Positivity in real-time PCR using any respiratory specimens suggests the possibility of active TB in clinically suspected cases, guiding to start anti-TB medication. Real-time PCR from selective bronchoscopic aspirates enhances the diagnostic yield much more when added to sputum examination.

Keyword

Diagnosis; Sputum; Bronchoscopy; Real-Time Polymerase Chain Reaction; Tuberculosis, Pulmonary

MeSH Terms

Bronchoscopy
Diagnosis*
Incidence
Korea
Lung
Pleura
Prevalence
Real-Time Polymerase Chain Reaction*
Retrospective Studies
Sputum
Tuberculosis
Tuberculosis, Pulmonary*

Figure

  • Figure 1 Sensitivity, specificity, and accuracy of real-time polymerase chain reaction with sputum or bronchoscopic aspirate for the detection of Mycobacterium tuberculosis.


Reference

1. World Health Organization. Global tuberculosis report 2013 [Internet]. Geneva: World Health Organization;2013. cited 2014 Jun 30. Available from: http://www.who.int/tb/publications/global_report/en/.
2. Dye C, Watt CJ, Bleed DM, Hosseini SM, Raviglione MC. Evolution of tuberculosis control and prospects for reducing tuberculosis incidence, prevalence, and deaths globally. JAMA. 2005; 293:2767–2775.
3. Levy H, Feldman C, Sacho H, van der Meulen H, Kallenbach J, Koornhof H. A reevaluation of sputum microscopy and culture in the diagnosis of pulmonary tuberculosis. Chest. 1989; 95:1193–1197.
4. Ritchie SR, Harrison AC, Vaughan RH, Calder L, Morris AJ. New recommendations for duration of respiratory isolation based on time to detect Mycobacterium tuberculosis in liquid culture. Eur Respir J. 2007; 30:501–507.
5. Diagnostic Standards and Classification of Tuberculosis in Adults and Children. This official statement of the American Thoracic Society and the Centers for Disease Control and Prevention was adopted by the ATS Board of Directors, July 1999. This statement was endorsed by the Council of the Infectious Disease Society of America, September 1999. Am J Respir Crit Care Med. 2000; 161(4 Pt 1):1376–1395.
6. Drosten C, Panning M, Kramme S. Detection of Mycobacterium tuberculosis by real-time PCR using pan-mycobacterial primers and a pair of fluorescence resonance energy transfer probes specific for the M. tuberculosis complex. Clin Chem. 2003; 49:1659–1661.
7. Greco S, Rulli M, Girardi E, Piersimoni C, Saltini C. Diagnostic accuracy of in-house PCR for pulmonary tuberculosis in smear-positive patients: meta-analysis and metaregression. J Clin Microbiol. 2009; 47:569–576.
8. Bartlett JM, Stirling D. A short history of the polymerase chain reaction. Methods Mol Biol. 2003; 226:3–6.
9. Espy MJ, Uhl JR, Sloan LM, Buckwalter SP, Jones MF, Vetter EA, et al. Real-time PCR in clinical microbiology: applications for routine laboratory testing. Clin Microbiol Rev. 2006; 19:165–256.
10. Mdivani N, Li H, Akhalaia M, Gegia M, Goginashvili L, Kernodle DS, et al. Monitoring therapeutic efficacy by real-time detection of Mycobacterium tuberculosis mRNA in sputum. Clin Chem. 2009; 55:1694–1700.
11. Rosso F, Michelon CT, Sperhacke RD, Verza M, Olival L, Conde MB, et al. Evaluation of real-time PCR of patient pleural effusion for diagnosis of tuberculosis. BMC Res Notes. 2011; 4:279.
12. Min JW, Yoon HI, Park KU, Song JH, Lee CT, Lee JH. Real-time polymerase chain reaction in bronchial aspirate for rapid detection of sputum smear-negative tuberculosis. Int J Tuberc Lung Dis. 2010; 14:852–858.
13. Hwang S, Oh KJ, Jang IH, Uh Y, Yoon KJ, Kim HY, et al. Evaluation of the diagnostic performance of the AdvanSure TB/NTM real-time PCR kit for detection of mycobacteria. Korean J Clin Microbiol. 2011; 14:55–59.
14. Master RN. Digestion-decontamination procedures, part 3.4. In : Isenberg HO, editor. Clinical microbiology procedures handbook. Vol. 1. Washington, DC: American Society for Microbiology;1992. p. 341–344.
15. Lee H, Park KG, Lee G, Park J, Park YG, Park YJ. Assessment of the quantitative ability of AdvanSure TB/NTM real-time PCR in respiratory specimens by comparison with phenotypic methods. Ann Lab Med. 2014; 34:51–55.
16. Hwang SM, Lim MS, Hong YJ, Kim TS, Park KU, Song J, et al. Simultaneous detection of Mycobacterium tuberculosis complex and nontuberculous mycobacteria in respiratory specimens. Tuberculosis (Edinb). 2013; 93:642–646.
17. Rapid diagnostic tests for tuberculosis: what is the appropriate use? American Thoracic Society Workshop. Am J Respir Crit Care Med. 1997; 155:1804–1814.
18. Cohen RA, Muzaffar S, Schwartz D, Bashir S, Luke S, McGartland LP, et al. Diagnosis of pulmonary tuberculosis using PCR assays on sputum collected within 24 hours of hospital admission. Am J Respir Crit Care Med. 1998; 157:156–161.
19. Kivihya-Ndugga L, van Cleeff M, Juma E, Kimwomi J, Githui W, Oskam L, et al. Comparison of PCR with the routine procedure for diagnosis of tuberculosis in a population with high prevalences of tuberculosis and human immunodeficiency virus. J Clin Microbiol. 2004; 42:1012–1015.
20. Tamura A, Shimada M, Matsui Y, Kawashima M, Suzuki J, Ariga H, et al. The value of fiberoptic bronchoscopy in culture-positive pulmonary tuberculosis patients whose pre-bronchoscopic sputum specimens were negative both for smear and PCR analyses. Intern Med. 2010; 49:95–102.
21. Tueller C, Chhajed PN, Buitrago-Tellez C, Frei R, Frey M, Tamm M. Value of smear and PCR in bronchoalveolar lavage fluid in culture positive pulmonary tuberculosis. Eur Respir J. 2005; 26:767–772.
22. Chen X, Yang Q, Kong H, Chen Y. Real-time PCR and Amplified MTD(R) for rapid detection of Mycobacterium tuberculosis in pulmonary specimens. Int J Tuberc Lung Dis. 2012; 16:235–239.
23. Araj GF, Talhouk RS, Itani LY, Jaber W, Jamaleddine GW. Comparative performance of PCR-based assay versus microscopy and culture for the direct detection of Mycobacterium tuberculosis in clinical respiratory specimens in Lebanon. Int J Tuberc Lung Dis. 2000; 4:877–881.
24. Boehme CC, Nabeta P, Hillemann D, Nicol MP, Shenai S, Krapp F, et al. Rapid molecular detection of tuberculosis and rifampin resistance. N Engl J Med. 2010; 363:1005–1015.
Full Text Links
  • TRD
Actions
Cited
CITED
export Copy
Close
Share
  • Twitter
  • Facebook
Similar articles
Copyright © 2024 by Korean Association of Medical Journal Editors. All rights reserved.     E-mail: koreamed@kamje.or.kr