- Editor's Introduction to This Issue
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Kim S
- KMID: 2166497
- Genomics Inform.
- 2013 Dec;11(4):163-163.
- doi: 10.5808/GI.2013.11.4.163
No abstract available. -
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- Introduction to International Ethical Standards Related to Genetics and Genomics
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Yim SH, Chung YJ
- KMID: 2166505
- Genomics Inform.
- 2013 Dec;11(4):218-223.
- doi: 10.5808/GI.2013.11.4.218
The rapid advances in genetic knowledge and technology raise various, sometimes unprecedented, ethical dilemmas in the scientific community as well as the public realm. To deal with these dilemmas, the... -
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- Application of Cancer Genomics to Solve Unmet Clinical Needs
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Lee SH, Sim SH, Kim JY, Cha S, Song A
- KMID: 2166499
- Genomics Inform.
- 2013 Dec;11(4):174-179.
- doi: 10.5808/GI.2013.11.4.174
The large amount of data on cancer genome research has contributed to our understanding of cancer biology. Indeed, the genomics approach has a strong advantage for analyzing multi-factorial and complicated... -
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- Perspectives on Clinical Informatics: Integrating Large-Scale Clinical, Genomic, and Health Information for Clinical Care
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Choi IY, Kim TM, Kim MS, Mun SK, Chung YJ
- KMID: 2166501
- Genomics Inform.
- 2013 Dec;11(4):186-190.
- doi: 10.5808/GI.2013.11.4.186
The advances in electronic medical records (EMRs) and bioinformatics (BI) represent two significant trends in healthcare. The widespread adoption of EMR systems and the completion of the Human Genome Project... -
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- Study of Modern Human Evolution via Comparative Analysis with the Neanderthal Genome
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Ahmed M, Liang P
- KMID: 2166507
- Genomics Inform.
- 2013 Dec;11(4):230-238.
- doi: 10.5808/GI.2013.11.4.230
Many other human species appeared in evolution in the last 6 million years that have not been able to survive to modern times and are broadly known as archaic humans,... -
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- Genomic Profiling of Liver Cancer
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Lee JS
- KMID: 2166500
- Genomics Inform.
- 2013 Dec;11(4):180-185.
- doi: 10.5808/GI.2013.11.4.180
Development of liver cancers is driven largely by genomic alterations that deregulate signaling pathways, influencing growth and survival of cancer cells. Because of the hundreds or thousands of genomic/epigenomic alterations... -
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- Forensic Body Fluid Identification by Analysis of Multiple RNA Markers Using NanoString Technology
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Park JL, Park SM, Kim JH, Lee HC, Lee SH, Woo KM, Kim SY
- KMID: 2166513
- Genomics Inform.
- 2013 Dec;11(4):277-281.
- doi: 10.5808/GI.2013.11.4.277
RNA analysis has become a reliable method of body fluid identification for forensic use. Previously, we developed a combination of four multiplex quantitative PCR (qRT-PCR) probes to discriminate four different... -
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- A Primer for Disease Gene Prioritization Using Next-Generation Sequencing Data
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Wang S, Xing J
- KMID: 2166502
- Genomics Inform.
- 2013 Dec;11(4):191-199.
- doi: 10.5808/GI.2013.11.4.191
High-throughput next-generation sequencing (NGS) technology produces a tremendous amount of raw sequence data. The challenges for researchers are to process the raw data, to map the sequences to genome, to... -
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- Review of Biological Network Data and Its Applications
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Yu D, Kim M, Xiao G, Hwang TH
- KMID: 2166503
- Genomics Inform.
- 2013 Dec;11(4):200-210.
- doi: 10.5808/GI.2013.11.4.200
Studying biological networks, such as protein-protein interactions, is key to understanding complex biological activities. Various types of large-scale biological datasets have been collected and analyzed with high-throughput technologies, including DNA... -
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- Molecular Vibration-Activity Relationship in the Agonism of Adenosine Receptors
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Chee HK, Oh SJ
- KMID: 2166514
- Genomics Inform.
- 2013 Dec;11(4):282-288.
- doi: 10.5808/GI.2013.11.4.282
The molecular vibration-activity relationship in the receptor-ligand interaction of adenosine receptors was investigated by structure similarity, molecular vibration, and hierarchical clustering in a dataset of 46 ligands of adenosine receptors.... -
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- Receptor for Advanced Glycation Endproducts (RAGE), Its Ligands, and Soluble RAGE: Potential Biomarkers for Diagnosis and Therapeutic Targets for Human Renal Diseases
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Lee EJ, Park JH
- KMID: 2166506
- Genomics Inform.
- 2013 Dec;11(4):224-229.
- doi: 10.5808/GI.2013.11.4.224
Receptor for advanced glycation endproducts (RAGE) is a multi-ligand receptor that is able to bind several different ligands, including advanced glycation endproducts, high-mobility group protein (B)1 (HMGB1), S-100 calcium-binding protein,... -
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- Phylogeny of Flavobacteria Group Isolated from Freshwater Using Multilocus Sequencing Analysis
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Mun S, Lee J, Lee S, Han K, Ahn TY
- KMID: 2166512
- Genomics Inform.
- 2013 Dec;11(4):272-276.
- doi: 10.5808/GI.2013.11.4.272
Sequence analysis of the 16S rRNA gene has been widely used for the classification of microorganisms. However, we have been unable to clearly identify five Flavobacterium species isolated from a... -
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- Somatic Mutaome Profile in Human Cancer Tissues
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Kim N, Hong Y, Kwon D, Yoon S
- KMID: 2166508
- Genomics Inform.
- 2013 Dec;11(4):239-244.
- doi: 10.5808/GI.2013.11.4.239
Somatic mutation is a major cause of cancer progression and varied responses of tumors against anticancer agents. Thus, we must obtain and characterize genome-wide mutational profiles in individual cancer subtypes.... -
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- Current Status, Challenges, Policies, and Bioethics of Biobanks
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Kang B, Park J, Cho S, Lee M, Kim N, Min H, Lee S, Park O, Han B
- KMID: 2166504
- Genomics Inform.
- 2013 Dec;11(4):211-217.
- doi: 10.5808/GI.2013.11.4.211
Many biobanks were established as biorepositories for biomedical research, and a number of biobanks were founded in the 1990s. The main aim of the biobank is to store and to... -
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- Interplay between Epigenetics and Genetics in Cancer
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Choi JD, Lee JS
- KMID: 2166498
- Genomics Inform.
- 2013 Dec;11(4):164-173.
- doi: 10.5808/GI.2013.11.4.164
Genomic instability, which occurs through both genetic mechanisms (underlying inheritable phenotypic variations caused by DNA sequence-dependent alterations, such as mutation, deletion, insertion, inversion, translocation, and chromosomal aneuploidy) and epigenomic aberrations... -
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- hpvPDB: An Online Proteome Reserve for Human Papillomavirus
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Kumar S, Jena L, Daf S, Mohod K, Goyal P, Varma AK
- KMID: 2166515
- Genomics Inform.
- 2013 Dec;11(4):289-291.
- doi: 10.5808/GI.2013.11.4.289
Human papillomavirus (HPV) infection is the leading cause of cancer mortality among women worldwide. The molecular understanding of HPV proteins has significant connotation for understanding their intrusion in the host... -
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- Genetic Variations of ABCC2 Gene Associated with Adverse Drug Reactions to Valproic Acid in Korean Epileptic Patients
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Yi JH, Cho YJ, Kim WJ, Lee MG, Lee JH
- KMID: 2166510
- Genomics Inform.
- 2013 Dec;11(4):254-262.
- doi: 10.5808/GI.2013.11.4.254
The multidrug resistance protein 2 (MRP2, ABCC2) gene may determine individual susceptibility to adverse drug reactions (ADRs) in the central nervous system (CNS) by limiting brain access of antiepileptic drugs,... -
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- TT Mutant Homozygote of Kruppel-like Factor 5 Is a Key Factor for Increasing Basal Metabolic Rate and Resting Metabolic Rate in Korean Elementary School Children
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Choi JR, Kwon IS, Kwon DY, Kim MS, Lee M
- KMID: 2166511
- Genomics Inform.
- 2013 Dec;11(4):263-271.
- doi: 10.5808/GI.2013.11.4.263
We investigated the contribution of genetic variations of KLF5 to basal metabolic rate (BMR) and resting metabolic rate (RMR) and the inhibition of obesity in Korean children. A variation of... -
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- Characterization of H460R, a Radioresistant Human Lung Cancer Cell Line, and Involvement of Syntrophin Beta 2 (SNTB2) in Radioresistance
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Im CN, Kim BM, Moon EY, Hong DW, Park JW, Hong SH
- KMID: 2166509
- Genomics Inform.
- 2013 Dec;11(4):245-253.
- doi: 10.5808/GI.2013.11.4.245
A radioresistant cell line was established by fractionated ionizing radiation (IR) and assessed by a clonogenic assay, flow cytometry, and Western blot analysis, as well as zymography and a wound... -
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