- ESTin: A Program for Building a dbEST Submission File from Massive EST Sequences
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Lee B
- KMID: 2166241
- Genomics Inform.
- 2006 Dec;4(4):170-172.
ESTin is an easy-to-use tool that allows EST researchers to build a dbEST submission file with EST sequences and related data. The advantages of ESTin are its user-friendly interface, various... -
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- A Pattern Summary System Using BLAST for Sequence Analysis
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Choi HS, Kim DW, Ryu TW
- KMID: 2166243
- Genomics Inform.
- 2006 Dec;4(4):173-181.
Pattern finding is one of the important tasks in a protein or DNA sequence analysis. Alignment is the widely used technique for finding patterns in sequence analysis. BLAST (Basic Local... -
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- In Silico Identification of 6-Phosphogluconolactonase Genes that are Frequently Missing from Completely Sequenced Bacterial Genomes
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Jeong H, Kim JF, Park HS
- KMID: 2166245
- Genomics Inform.
- 2006 Dec;4(4):182-187.
6-Phosphogluconolactonase (6PGL) is one of the key enzymes in the ubiquitous pathways of central carbon metabolism, but bacterial 6PGL had been long known as a missing enzyme even after complete bacterial... -
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- New Approach to the Analysis of Palindromic Structure in Genome Sequences
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Kim SW, Lee YS, Choi SH, Chae SH, Kim DW, Park HS
- KMID: 2166239
- Genomics Inform.
- 2006 Dec;4(4):167-169.
PABAP (Palindrome Analysis by BLAST Program) is an analysis system that identifies palindromic sequences from a large genome sequence up to several megabases long. It uses NCBI BLAST as a searching... -
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- Chromosomal Information of 1,144 Korean BAC Clones
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Park MH, Lee HJ, Kim KJ, Jeon JP, Lee HJ, Kim JW, Kim HT, Cha HS, Kim CH, Choi KY, Park C, Oh B, Kimm K, Lee JY, Han BG
- KMID: 2166234
- Genomics Inform.
- 2006 Dec;4(4):141-146.
We sequenced 1,841 BAC clones by terminal sequencing, and 1,830 of these clones were characterized with regard to their human chromosomal location and gene content using Korean BAC library constructed... -
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- Prediction Model for the Cellular Immortalization and Transformation Potentials of Cell Substrates
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Lee MS, Matthews C, Chae MJ, Choi JY, Sohn YW, Kim MJ, Lee SJ, Park WY
- KMID: 2166238
- Genomics Inform.
- 2006 Dec;4(4):161-166.
The establishment of DNA microarray technology has enabled high-throughput analysis and molecular profiling of various types of cancers. By using the gene expression data from microarray analysis we are able... -
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- A Comparative Genome-Wide Analysis of GATA Transcription Factors in Fungi
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Park J, Kim H, Kim S, Kong S, Park J, Kim S, Han HY, Park B, Jung K, Lee YH
- KMID: 2166236
- Genomics Inform.
- 2006 Dec;4(4):147-160.
GATA transcription factors are widespread eukaryotic regulators whose DNA-binding domain is a class IV zinc finger motif in the form CX(2)CX(17-20)CX(2)C followed by a basic region. In fungi, they act... -
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