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In Silico Identification of 6-Phosphogluconolactonase Genes that are Frequently Missing from Completely Sequenced Bacterial Genomes

Jeong H, Kim JF, Park HS

  • KMID: 2166245
  • Genomics Inform.
  • 2006 Dec;4(4):182-187.
6-Phosphogluconolactonase (6PGL) is one of the key enzymes in the ubiquitous pathways of central carbon metabolism, but bacterial 6PGL had been long known as a missing enzyme even after complete bacterial...
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A Pattern Summary System Using BLAST for Sequence Analysis

Choi HS, Kim DW, Ryu TW

  • KMID: 2166243
  • Genomics Inform.
  • 2006 Dec;4(4):173-181.
Pattern finding is one of the important tasks in a protein or DNA sequence analysis. Alignment is the widely used technique for finding patterns in sequence analysis. BLAST (Basic Local...
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ESTin: A Program for Building a dbEST Submission File from Massive EST Sequences

Lee B

  • KMID: 2166241
  • Genomics Inform.
  • 2006 Dec;4(4):170-172.
ESTin is an easy-to-use tool that allows EST researchers to build a dbEST submission file with EST sequences and related data. The advantages of ESTin are its user-friendly interface, various...
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New Approach to the Analysis of Palindromic Structure in Genome Sequences

Kim SW, Lee YS, Choi SH, Chae SH, Kim DW, Park HS

  • KMID: 2166239
  • Genomics Inform.
  • 2006 Dec;4(4):167-169.
PABAP (Palindrome Analysis by BLAST Program) is an analysis system that identifies palindromic sequences from a large genome sequence up to several megabases long. It uses NCBI BLAST as a searching...
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Prediction Model for the Cellular Immortalization and Transformation Potentials of Cell Substrates

Lee MS, Matthews C, Chae MJ, Choi JY, Sohn YW, Kim MJ, Lee SJ, Park WY

  • KMID: 2166238
  • Genomics Inform.
  • 2006 Dec;4(4):161-166.
The establishment of DNA microarray technology has enabled high-throughput analysis and molecular profiling of various types of cancers. By using the gene expression data from microarray analysis we are able...
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A Comparative Genome-Wide Analysis of GATA Transcription Factors in Fungi

Park J, Kim H, Kim S, Kong S, Park J, Kim S, Han HY, Park B, Jung K, Lee YH

  • KMID: 2166236
  • Genomics Inform.
  • 2006 Dec;4(4):147-160.
GATA transcription factors are widespread eukaryotic regulators whose DNA-binding domain is a class IV zinc finger motif in the form CX(2)CX(17-20)CX(2)C followed by a basic region. In fungi, they act...
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Chromosomal Information of 1,144 Korean BAC Clones

Park MH, Lee HJ, Kim KJ, Jeon JP, Lee HJ, Kim JW, Kim HT, Cha HS, Kim CH, Choi KY, Park C, Oh B, Kimm K, Lee JY, Han BG

  • KMID: 2166234
  • Genomics Inform.
  • 2006 Dec;4(4):141-146.
We sequenced 1,841 BAC clones by terminal sequencing, and 1,830 of these clones were characterized with regard to their human chromosomal location and gene content using Korean BAC library constructed...
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