- Challenges and New Approaches in Genomics and Bioinformatics
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Park JH, Han KS
- KMID: 1973989
- Genomics Inform.
- 2003 Sep;1(1):1-6.
No abstract available. -
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- Global Optimization of Clusters in Gene Expression Data of DNA Microarrays by Deterministic Annealing
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Lee KM, Chung TS, Kim JH
- KMID: 1973991
- Genomics Inform.
- 2003 Sep;1(1):20-24.
The analysis of DNA microarry data is one of the most important things for functional genomics research. The matrix representation of microarray data and its successive 'optimal' incisional hyperplanes is... -
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- Biological Network Evolution Hypothesis Applied to Protein Structural Interactome
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Bolser DM, Park JH
- KMID: 1973990
- Genomics Inform.
- 2003 Sep;1(1):7-19.
The latest measure of the relative evolutionary age of protein structure families was applied (based on taxonomic diversity) using the protein structural interactome map (PSIMAP). It confirms that, in general,... -
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- Computational Analysis of Neighboring Genes on Arabidopsis thaliana Chromosomes 4 and 5: Their Genomic Association as Functional Subunits
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Goh SH, Kim TH, Kim JH, Nam DG, Choi D, Hur CG
- KMID: 1973994
- Genomics Inform.
- 2003 Sep;1(1):40-49.
The genes related to specific events or pathways in bacteria are frequently localized proximate to the genome of their neighbors, as with the structures known as operon, but eukaryotic genes... -
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- Gene Expression Pattern Analysis via Latent Variable Models Coupled with Topographic Clustering
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Chang JH, Chi SW, Zhang BT
- KMID: 1973993
- Genomics Inform.
- 2003 Sep;1(1):32-39.
We present a latent variable model-based approach to the analysis of gene expression patterns, coupled with topographic clustering. Aspect model, a latent variable model for dyadic data, is applied to... -
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- A Heuristic Algorithm to Find All Normalized Local Alignments Above Threshold
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Kim S, Sim JS, Park H, Park K, Park H, Seo JS
- KMID: 1973992
- Genomics Inform.
- 2003 Sep;1(1):25-31.
Local alignment is an important task in molecular biology to see if two sequences contain regions that are similar. The most popular approach to local alignment is the use of... -
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- A Small Cryptic Plasmid pZMO1 of Zymomonas mobilis ATCC10988
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Kang HL, Kang HS
- KMID: 1973996
- Genomics Inform.
- 2003 Sep;1(1):55-60.
The nucleotide sequence of pZMO1, a small cryptic plasmid of Zymomonas mobilis ATCC10988 was determined. Analysis of 1,680 bp of sequence revealed 69% identity with Shigella sonnei plasmid, pKYM and... -
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- Genome Mapping of an Extreme Thermophile, Thermus caldophilus GK24
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Park JH, Park BC, Koch SH, Kim JS, Koh JH, Yang MH, Kim YS, Kim CH, Kim MH, Kwon ST, Lee DS
- KMID: 1973995
- Genomics Inform.
- 2003 Sep;1(1):50-54.
Genome of an extreme thermophile, Thermus caldophilus GK24 has been analyzed to construct the genomic map. The genomic DNAs encapsulated in agarose gel were digested with SspI, EcoRI, SpeI, and... -
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