Genomics Inform.  2022 Mar;20(1):e5. 10.5808/gi.21070.

Presentation of potential genes and deleterious variants associated with non-syndromic hearing loss: a computational approach

• Ray M
• Rath SN
• Sarkar S
• Sable MN

• KMID: 2527948
• DOI: http://doi.org/10.5808/gi.21070

Abstract

Non-syndromic hearing loss (NSHL) is a common hereditary disorder. Both clinical and genetic heterogeneity has created many obstacles to understanding the causes of NSHL. The present study has attempted to ravel the genetic aetiology in NSHL progression and to screen out potential target genes using computational approaches. The reported NSHL target genes (2009‒2020) have been studied by analyzing different biochemical and signaling pathways, interpretation of their functional association network, and discovery of important regulatory interactions with three previously established miRNAs in the human inner ear as well as in NSHL such as miR-183, miR-182, and miR-96. This study has identified SMAD4 and SNAI2 as the most putative target genes of NSHL. But pathogenic and deleterious non-synonymous single nucleotide polymorphisms (nsSNP) discovered within SMAD4 is anticipated to have an impact on NSHL progression. Additionally, the identified deleterious variants in the functional domains of SMAD4 added a supportive clue for further study. Thus, the identified deleterious variant i.e., rs377767367 (G491V) in SMAD4 needs further clinical validation. The present outcomes would provide insights into the genetics of NSHL progression.

Keyword

computational approach; functional association network; miRNAs; non-syndromic hearing loss; single nucleotide polymorphism