Genomics Inform.
2020 Dec;18(4):e46. 10.5808/GI.2020.18.4.e46.
BaSDAS: a web-based pooled CRISPR-Cas9 knockout screening data analysis system
- Affiliations
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- 1OmicsPia Co., Ltd., Daejeon, Korea
- 2Personalized Genomic Medicine Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon, Korea
- 3Department of Functional Genomics, University of Science and Technology (UST), Daejeon, Korea
- KMID: 2510361
- DOI: http://doi.org/10.5808/GI.2020.18.4.e46
Abstract
- We developed the BaSDAS (Barcode-Seq Data Analysis System), a GUI-based pooled knockout screening data analysis system, to facilitate the analysis of pooled knockout screen data easily and effectively by researchers with limited bioinformatics skills. The BaSDAS supports the analysis of various pooled screening libraries, including yeast, human, and mouse libraries, and provides many useful statistical and visualization functions with a user-friendly web interface for convenience. We expect that BaSDAS will be a useful tool for the analysis of genome-wide screening data and will support the development of novel drugs based on functional genomics information.
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