Nat Prod Sci.  2015 Dec;21(4):261-267. 10.20307/nps.2015.21.4.261.

Deuteromethylactin B from a Freshwater-derived Streptomyces sp.

Affiliations
  • 1Department of Medicinal Chemistry and Pharmacognosy, University of Illinois at Chicago, Chicago, IL 60612, USA. btmurphy@uic.edu
  • 2Center for Biomolecular Sciences, University of Illinois at Chicago, Chicago, IL 60607, USA.
  • 3Department of Biological Sciences, University of Illinois at Chicago, Chicago, IL 60607, USA.
  • 4DNA Services Facility, University of Illinois at Chicago, Chicago, IL, 60612, USA.

Abstract

Compared to their terrestrial and marine counterparts, little is known about the capacity of freshwater-derived actinomycete bacteria to produce novel secondary metabolites. In the current study, we highlight the disparities that exist between cultivation-independent and -dependent analyses of actinomycete communities from four locations in Lake Michigan sediment. Furthermore, through phylogenetic analysis of strains isolated from these locations, we identified a Streptomyces sp., strain B025, as being distinct from other Streptomyces spp. isolated from sediment. Upon fermentation this strain produced a rare class of eight-membered lactone secondary metabolites, which have been for their antitumor properties. We used spectroscopic and chemical derivitization techniques to characterize octalactin B (1) in addition to its corresponding novel, unnatural degradation product (2).

Keyword

Actinomycete; Freshwater; Streptomyces; Octalactin

MeSH Terms

Bacteria
Fermentation
Fresh Water
Lakes
Michigan
Streptomyces*

Figure

  • Fig. 1. Composition of bacterial community in collected Lake Michigan sediment.

  • Fig. 2. Phylogenetic analysis of cultivatable actinomycete strains from Lake Michigan.

  • Fig. 3. Structure of octalactin B (1), and deuteromethylactin B (2).

  • Fig. 4. CD Spectrum of 1.

  • Fig. 5. Key 2D NMR correlations of 2.


Reference

(1). Newman D. J., Cragg G. M. J.Nat. Prod. 2012; 75:311–335.
(2). Fenical W., Jensen P. R.Nat. Chem. Biol. 2006; 2:666–673.
(3). Gerwick W. H., Moore B. S.Chem. Biol. 2012; 19:85–98.
(4). Mullowney M. W., Hwang C. H., Newsome A. G., Wei X., Tanouye U., Wan B., Carlson S., Barranis N. J., ÓhAinmhire E., Chen W. L., Krishnamoorthy K., White J., Blair R., Lee H., Burdette J. E., Rathod P. K., Parish T., Cho S., Franzblau S. G., Murphy B. T.ACS Infect. Dis. 2015; 1:168–174.
(5). Carlson S., Tanouye U., Omarsdottir S., Murphy B. T. J.Nat. Prod. 2015; 78:381–387.
(6). Caporaso J. G., Lauber C. L., Walters W. A., Berg-Lyons D., Huntley J., Fierer N., Owens S. M., Betley J., Fraser L., Bauer M., Gormley N., Gilbert J. A., Smith G., Knight R.ISME J. 2012; 6:1621–1624.
(7). Caporaso J. G., Kuczynski J., Stombaugh J., Bittinger K., Bushman F. D., Costello E. K., Fierer N., Peña A. G., Goodrich J. K., Gordon J. I., Huttley G. A., Kelley S. T., Knights D., Koenig J. E., Ley R. E., Lozupone C. A., McDonald D., Muegge B. D., Pirrung M., Reeder J., Sevinsky J. R., Turnbaugh P. J., Walters W. A., Widmann J., Yatsunenko T., Zaneveld J., Knight R.Nat. Methods. 2010; 7:335–336.
(8). Edgar R. C.Bioinformatics. 2010; 26:2460–2461.
(9). Gihring T. M., Green S. J., Schadt C. W.Environ. Microbiol. 2012; 14:285–290.
(10). McDonald D., Price M. N., Goodrich J., Nawrocki E. P., DeSantis T. Z., Probst A., Andersen G. L., Knight R., Hugenholtz P.ISME J. 2012; 6:610–618.
(11). Wang Q., Garrity G. M., Tiedje J. M., Cole J. R.Appl. Environ. Microbiol. 2007; 73:5261–5267.
(12). Clarke K. R.Aust. J. Ecol. 1993; 18:117–143.
(13). Green S. J., Prakash O., Jasrotia P., Overholt W. A., Cardenas E., Hubbard D., Tiedje J. M., Watson D. B., Schadt C. W., Brooks S. C., Kostka J. E.Appl. Environ. Microbiol. 2012; 78:1039–1047.
(14). DeSantis T. Z., Hugenholtz P., Larsen N., Rojas M., Brodie E. L., Keller K., Huber T., Dalevi D., Hu P., Andersen G. L.Appl. Environ. Microbiol. 2006; 72:5069–5072.
(15). Ludwig W., Strunk O., Westram R., Richter L., Meier H., Yadhukumar Buchner A., Lai T., Steppi S., Jobb G., Forster W., Brettske I., Gerber S., Ginhart A. W., Gross O., Grumann S., Hermann S., Jost R., Konig A., Liss T., Lüssmann R., May M., Nonhoff B., Reichel B., Strehlow R., Stamatakis A., Stuckmann N., Vilbig A., Lenke M., Ludwig T., Bode A., Schleifer K. H.Nucleic Acids Res. 2004; 32:1363–1371.
(16). Tamura K., Peterson D., Peterson N., Stecher G., Nei M., Kumar S.Mol. Biol. Evol. 2011; 28:2731–2739.
(17). Ronquist F., Huelsenbeck J. P.Bioinformatics. 2003; 19:1572–1574.
(18). Jensen P. R., Moore B. S., Fenical W.Nat. Prod. Rep. 2015; 32:738–751.
(19). Newton R. J., Jones S. E., Eiler A., McMahon K. D., Bertilsson S.Microbiol. Mol. Biol. Rev. 2011; 75:14–49.
(20). Glöckner F. O., Zaichikov E., Belkova N., Denissova L., Pernthaler J., Pernthaler A., Amann R.Appl. Environ. Microbiol. 2000; 66:5053–5065.
(21). Zwart G., Crump B. C., Kamst-van Agterveld M. P. K. V., Hagen F., Han S. K.Aquat. Microb. Ecol. 2002; 28:141–155.
(22). Warnecke F., Amann R., Pernthaler J.Environ. Microbiol. 2004; 6:242–253.
(23). Newton R. J., Jones S. E., Helmus M. R., McMahon K. D.Appl. Environ. Microbiol. 2007; 73:7169–7176.
(24). Hahn M. W., Lünsdorf H., Wu Q., Schauer M., Höfle M. G., Boenigk J., Stadler P.Appl. Environ. Microbiol. 2003; 69:1442–1451.
(25). Hahn M. W.Int. J. Syst. Evol. Microbiol. 2009; 59:112–117.
Article
(26). Tapiolas D. M., Roman M., Fenical W., Stout T. J., Clardy J. J.Am. Chem. Soc. 1991; 113:4682–4683.
(27). Dinh M. T., Bouzbouz S., Péglion J. L., Cossy J.Tetrahedron. 2008; 64:5703–5710.
(28). O'Sullivan P. T., Buhr W., Fuhry M. A. M., Harrison J. R., Davies J. E., Feeder N., Marshall D. R., Burton J. W., Holmes A. B. J.Am. Chem. Soc. 2004; 126:2194–2207.
(29). Shiina I., Hashizume M., Yamai Y. S., Oshiumi H., Shimazaki T., Takasuna Y. J., Ibuka R.Chemistry. 2005; 11:6601–6608.
(30). Dinh M. T., BouzBouz S., Peglion J. L., Cossy J.Synlett. 2005; 18:2851–2853.
(31). Shiina I., Oshiumi H., Hashizume M., Yamai Y. S., Ibuka R.Tetrahedron Lett. 2004; 45:543–547.
(32). Radosevich A. T., Chan V. S., Shih H. W., Toste F. D.Angew. Chem. Int. Ed Engl. 2008; 47:3755–3758.
(33). Hoye T. R., Jeffrey C. S., Shao F.Nat. Protoc. 2007; 2:2451–2458.
(34). Sullivan G. R., Dale J. A., Mosher H. S. J.Org. Chem. 1973; 38:2143–2147.
(35). Lee J. Y., Lee J. Y., Jung H. W., Hwang B. K.Int. J. Syst. Evol. Microbiol. 2005; 55:257–262.
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