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Prediction of HLA-DQ in Deceased Donors and its Clinical Significance in Kidney Transplantation

Kim SK, Yang JJ, Hwang SH, Sung H, Shin S, Ko SY, Oh HB

Background: HLA-DQ typing in deceased donors is not mandatory in Korea. Therefore, when patients develop DQ antibodies after kidney transplantation (KT) from deceased donor, it is impossible to determine whether...
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Demographic Trends in Korean Native Cattle Explained Using Bovine SNP50 Beadchip

Sharma A, Lim D, Chai HH, Choi BH, Cho Y

Linkage disequilibrium (LD) is the non-random association between the loci and it could give us a preliminary insight into the genetic history of the population. In the present study LD...
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Effects of Single Nucleotide Polymorphism Marker Density on Haplotype Block Partition

Kim SA, Yoo YJ

Many researchers have found that one of the most important characteristics of the structure of linkage disequilibrium is that the human genome can be divided into non-overlapping block partitions in...
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Effective Population Size of Korean Populations

Park L

Recently, new methods have been developed for estimating the current and recent changes in effective population sizes. Based on the methods, the effective population sizes of Korean populations were estimated...
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Effects of Intronic and Exonic Polymorphisms of Paraoxonase 1 (PON1) Gene on Serum PON1 Activity in a Korean Population

Eom SY, Kim YS, Lee CJ, Lee CH, Kim YD, Kim H

Paraoxonase 1 (PON1) hydrolyzes a number of toxic organophosphorous compounds and reduces lipid peroxide accumulation, and PON1 genetic polymorphisms in the coding region modulate serum PON1 activity. In this study,...
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An Alternative Way of Constructing Ancestral Graphs Using Marker Allele Ages from Population Linkage Disequilibrium Information

Park L

  • KMID: 2166435
  • Genomics Inform.
  • 2009 Mar;7(1):1-12.
An alternative way of constructing ancestral graphs, which is different from the coalescent-based approach, is proposed using population linkage disequilibrium (LD) data. The main difference from the existing method is...
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Association between Interleukin 31 Receptor A Gene Polymorphism and Schizophrenia in Korean Population

Ban JY, Kim SK, Kim HJ, Chung JH, Kim T, Park JK, Park HK, Kim JW

Recently, Sun et al (2008) reported that the IL6R polymorphism is associated with schizophrenia. Therefore, to detect the association between polymorphisms of interleukin 31 receptor A (IL31RA) and schizophrenia, we...
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Matrix Metallopeptidase 2 Gene Polymorphism is Associated with Obesity in Korean Population

Han DH, Kim SK, Kang S, Choe BK, Kim KS, Chung JH

The aim of this study was to determine whether single nucleotide polymorphisms (SNPs) of matrix metallopeptidase 2 (MMP2) are associated with obesity. MMP2 is an enzyme with proteolytic activity against...
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Assessment of Relationship between Fyn-related Kinase Gene Polymorphisms and Overweight/Obesity in Korean Population

Jung MY, Kim BS, Kim YJ, Koh IS, Chung JH

The fyn-related kinase (FRK) belongs to the tyrosine kinase family of protein kinases. Recent studies have shown that Frk affects pancreatic beta cell number during embryogenesis and promotes beta cell...
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Controlling Linkage Disequilibrium in Association Tests: Revisiting APOE Association in Alzheimer's Disease

Park L

  • KMID: 2166257
  • Genomics Inform.
  • 2007 Jun;5(2):61-67.
The allele frequencies of markers as well as linkage disequilibrium (LD) can be changed in cases due to the LD between markers and the disease allele, exhibiting spurious associations of...
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Distinct Linkage Disequilibrium (LD) Runs of Single Nucleotide Polymorphisms and Microsatellite Markers; Implications for Use of Mixed Marker Haplotypes in LD-based Mapping

Lee KA, Sohn KM, Cho SH, Hwang H, Kim SW, Won HH, Kim HJ, Kim MJ, Cho SS, Park JH, Kim JW

It has been suggested that the haplotypic relationship between microsatellite markers and single nucleotide polymorphisms (SNPs) is of considerable importance, as microsatellite markers can potentially be incorporated into haplotypes containing...
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Characterization of Single Nucleotide Polymorphisms in 55 Disease-Associated Genes in a Korean Population

Lee SK, Kim HG, Kang JJ, Oh W, Oh B, Kwack KB

  • KMID: 2166273
  • Genomics Inform.
  • 2007 Dec;5(4):152-160.
Most common diseases are caused by multiple genetic and environmental factors. Among the genetic factors, single nucleotide polymorphisms (SNPs) are common DNA sequence variations in individuals and can serve as...
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Heterozygosities of 735 microsatellite markers and background linkage disequilibrium in the Korean population

Lee KA, Kim JW

  • KMID: 1115944
  • Exp Mol Med.
  • 2006 Dec;38(6):662-667.
Suitability of a specific population for linkage disequilibrium mapping studies of complex traits may be assessed by investigating the background linkage disequilibrium (BLD). We are unaware of studies for quantifying...
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Linkage Disequilibrium Analysis of Quantitative Trait Locus Associated with Lipid Profiles

Song K, Lim KS, Cho JN, Jang YS, Park HY

BACKGROUND AND OBJECTIVES : The common methods of genetic association analysis are sensitive to population stratification, which may easily lead to a spurious association result. We used a regression approach...
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Power Analysis of Association Study Using Single Nucleotide Polymorphism

Jeong SH, Kim YS

  • KMID: 2340653
  • J Korean Neuropsychiatr Assoc.
  • 2002 Mar;41(2):201-214.
In order to find the disease susceptibility gene in these complex genetic trait, there have been much interests in association study using single nucleotide polymorphism (SNP). Association study can be...
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Genetic Studies of Psychiatric Disorders: The Basic Concepts and Methods of Quantitative Genetics

Joo EJ, Kim YS

  • KMID: 2340432
  • J Korean Neuropsychiatr Assoc.
  • 2000 Mar;39(2):257-272.
Quantitative medical genetics including genetic epidemiological studies, linkage studies, and association studies are the basis for molecular genetic studies to find the susceptible genes or responsible mutations for psychiatric disorders....
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