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MP-LASSO chart: a multi-level polar chart for visualizing group LASSO analysis of genomic data

Song M, Lee M, Park T, Park M

Penalized regression has been widely used in genome-wide association studies for jointanalyses to find genetic associations. Among penalized regression models, the least absolute shrinkage and selection operator (Lasso) method effectively...
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Applying the OMOP Common Data Model to Facilitate Benefit-Risk Assessments of Medicinal Products Using Real-World Data from Singapore and South Korea

Tan HX, Teo DCH, Lee D, Kim C, Neo JW, Sung C, Chahed H, Ang PS, Tan DSY, Park RW, Dorajoo SR

Objectives: The aim of this study was to characterize the benefits of converting Electronic Medical Records (EMRs) to a common data model (CDM) and to assess the potential of CDM-converted...
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Lymphovenous anastomoses with three-dimensional digital hybrid visualization: improving ergonomics for supermicrosurgery in lymphedema

Will PA, Hirche C, Berner JE, Kneser U, Gazyakan E

The conventional approach of looking down a microscope to perform microsurgical procedures is associated with occupational injuries, anti-ergonomic postures, and increased tremor and fatigue, all of which predispose microsurgeons to...
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A comparative study of glottis visualization according to the method of lifting the epiglottis in video laryngoscopy: indirect and direct lifting methods

Oh JY, Lee JH, Kim YY, Baek SM, Jung DW, Park JH

Background: The direct entry of the camera under the epiglottis may provide a better view of the glottis than the indirect lifting of the epiglottis by placing the Macintosh blade...
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BaSDAS: a web-based pooled CRISPR-Cas9 knockout screening data analysis system

Park YK, Yoon BH, Park SJ, Kim BK, Kim SY

We developed the BaSDAS (Barcode-Seq Data Analysis System), a GUI-based pooled knockout screening data analysis system, to facilitate the analysis of pooled knockout screen data easily and effectively by researchers...
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Visualization of unstructured personal narratives of perterm birth using text network analysis

Kim JI

Purpose: This study aimed to identify the components of preterm birth (PTB) through women’s personal narratives and to visualize clinical symptom expressions (CSEs). Methods: The participants were 11 women who...
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Extending TextAE for annotation of non-contiguous entities

Lever J, Altman R, Kim JD

Named entity recognition tools are used to identify mentions of biomedical entities in free text and are essential components of high-quality information retrieval and extraction systems. Without good entity recognition,...
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Augmentation of Doppler Radar Data Using Generative Adversarial Network for Human Motion Analysis

Alnujaim I, Kim Y

OBJECTIVES: Human motion analysis can be applied to the diagnosis of musculoskeletal diseases, rehabilitation therapies, fall detection, and estimation of energy expenditure. To analyze human motion with micro-Doppler signatures measured...
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Real-Time Computed Tomography Volume Visualization with Ambient Occlusion of Hand-Drawn Transfer Function Using Local Vicinity Statistic

Kim J, Ha T, Kye H

OBJECTIVES: In this paper, we present an efficient method to visualize computed tomography (CT) datasets using ambient occlusion, which is a global illumination technique that adds depth cues to the...
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Digital approach integrating 3D facial scan and a virtual mockup for esthetic restorative treatment: A case report

Mai HY, Choi YD, Lee DH

This clinical case report describes the digital workflow that combines a face scan, cone beam computed tomography and an intraoral scan to visualize the outcome of prosthodontic treatment in the...
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Atraumatic Removal of Displaced Implant in the Fatty Bony Marrow

Sodnom-Ish B, Eo MY, Nguyen TT, Cho YJ, Kim MJ, Kim SM

A 53-year-old Korean female was referred to the Department of Oral and Maxillofacial Surgery at the Seoul National University Dental Hospital. The patient's chief complaint and concern involved the occasional...
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Effects of a 3D Visualization Application and Game-Based Learning on Gross Anatomy Education: Focused on Some Students in the Department of Dental Hygiene

Kim DH

There is a lack of domestic studies that have designed anatomical education programs for systematic cadaver dissection and compared them with existing teaching methods. The purpose of this study was...
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Insights of window-bsed mechanism approach to visualize composite bioData point in feature spaces

Daoud M

In this paper, we propose a window-based mechanism visualization approach as an alternative way to measure the seriousness of the difference among data-insights extracted from a composite biodata point. The...
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Double-Balloon Endoscopy after Incomplete Colonoscopy and Its Comparison with Computed Tomography Colonography

Hermans C, van der Zee D, Gilissen L

BACKGROUND/AIMS: Because of the national screening program for colorectal carcinoma in The Netherlands, the number of colonoscopies has increased. In case of incomplete colonoscopy, computed tomography colonography (CTC) and double-balloon...
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IVAG: An Integrative Visualization Application for Various Types of Genomic Data Based on R-Shiny and the Docker Platform

Lee TR, Ahn JM, Kim G, Kim S

Next-generation sequencing (NGS) technology has become a trend in the genomics research area. There are many software programs and automated pipelines to analyze NGS data, which can ease the pain...
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Statistical data presentation

In J, Lee S

Data are usually collected in a raw format and thus the inherent information is difficult to understand. Therefore, raw data need to be summarized, processed, and analyzed. However, no matter...
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Geometrical characterization of the cavitation bubble clouds produced by a clinical shock wave device

Choi MJ, Kang G, Huh JS

This study was to optically visualize the cavitation bubbles produced by a clinical shock wave and to look into their geometric features of the resulting cavitation bubbles in relation to...
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Interactive Visualization for Patient-to-Patient Comparison

Nguyen QV, Nelmes G, Huang ML, Simoff S, Catchpoole D

A visual analysis approach and the developed supporting technology provide a comprehensive solution for analyzing large and complex integrated genomic and biomedical data. This paper presents a methodology that is...
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QCanvas: An Advanced Tool for Data Clustering and Visualization of Genomics Data

Kim N, Park H, He N, Lee HY, Yoon S

We developed a user-friendly, interactive program to simultaneously cluster and visualize omics data, such as DNA and protein array profiles. This program provides diverse algorithms for the hierarchical clustering of...
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A Visualization Tool for Computational Analysis of DNA Methylation Level Using Bisulfite Sequencing Data

Tae H

  • KMID: 1806240
  • Genomics Inform.
  • 2011 Sep;9(3):136-137.
Methylation of cytosine is a post-synthesis modification that does not affect the primary DNA sequence but greatly influences gene expression level and phenotypes of an organism. As high-throughput sequencing of...
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