- A Simple GUI-based Sequencing Format Conversion Tool for the Three NGS Platforms
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Rhie A, Yang S, Lee KE, Thong CT, Park HS
- KMID: 2166486
- Genomics Inform.
- 2010 Jun;8(2):97-99.
To allow for a quick conversion of the proprietary sequence data from various sequencing platforms, sequence format conversion toolkits are required that can be easily integrated into workflow systems. In... -
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- Java DOM Parsers to Convert KGML into SBML and BioPAX Common Exchange Formats
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Lee KE, Jang MH, Rhie A, Thong CT, Yang S, Park HS
- KMID: 2166485
- Genomics Inform.
- 2010 Jun;8(2):94-96.
Integrating various pathway data collections to create new biological knowledge is a challenge, for which novel computational tools play a key role. For this purpose, we developed the Java-based conversion... -
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- A Computer-aided Design Tool with Semiautomatic Image-Processing Features for Visualizing Biological Pathways
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Ham SI, Yang SD, Thong CT, Park HS
- KMID: 1469577
- Genomics Inform.
- 2009 Sep;7(3):168-170.
The explosion in biological data resulting from highthroughput experiments requires new software tools to manipulate and display pathways in a way that can integrate disparate sources of information. A visual... -
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- J2.5dPathway: A 2.5D Visualization Tool to Display Selected Nodes in Biological Pathways, in Parallel Planes
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Ham SI, Song EH, Yang SD, Thong CT, Rhie A, Galbadrakh B, Lee KE, Park HS, Lee SH
- KMID: 1469578
- Genomics Inform.
- 2009 Sep;7(3):171-174.
The characteristics of metabolic pathways make them particularly amenable to layered graph drawing methods. This paper presents a visual Java-based tool for drawing and annotating biological pathways in twoand- a-half... -
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