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Comparison of 16S Ribosomal RNA Targeted Sequencing and Culture for Bacterial Identification in Normally Sterile Body Fluid Samples: Report of a 10-Year Clinical Laboratory Review

Yoo IY, Kang OK, Lee MK, Kim YJ, Cho SY, Huh K, Kang CI, Chung DR, Peck KR, Huh HJ, Lee NY

As 16S ribosomal RNA (rRNA)-targeted sequencing can detect DNA from non-viable bacteria, it can be used to identify pathogens from clinical samples even in patients pretreated with antibiotics. We compared...
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Peptoniphilus mikwangii-specific quantitative real-time polymerase chain reaction primers

Park SN, Kook JK

The purpose of this study was to develop Peptoniphilus mikwangii -specific quantitative real-time polymerase chain reaction (qPCR) primers based on the 16S ribosomal RNA (16S rDNA) gene. The specificity of...
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The First Case of Otitis in Korea Caused by Brevibacterium otitidis

Mun SH, Lee AJ, Kim SG, Jeon CH, Park CG, Suh HS

Brevibacterium spp. are gram-positive rods that are considered to be strictly nonpathogenic, and a very few cases of their infection in humans have been reported. In this study, we report...
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Concomitant Liver and Brain Abscesses Caused by Parvimonas Micra

Kim EY, Baek YH, Jung DS, Woo KS

Anaerobic infections have been reported to be responsible for 3–10% of pyogenic liver abscesses in Korea, and reported anaerobes include Fusobacterium, Bacillus fragilis, and Bacteroides melaninogenicus. Parvimonas micra is an...
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Classification, bacteriological findings, and analysis of sex hormone receptors and cytokine expression in mammary lesions of abattoir sows

Ju JH, Shin JI, Lim HY, Kim HW, Seung BJ, Cho SH, Kim SH, Sur JH

Mammary lesions in sows can prevent suckling piglets from consuming colostrum that provides fundamental nutrients and protective immunity. Although mammary gross lesions are frequently found in sows at farms or...
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Comparison of differences in microbial compositions between negative controls and subject samples with varying analysis configurations

Kim H, Lee SP, Kang SM, Kang SY, Jung S, Lee SM

PURPOSE: Identifying microbial communities with 16S ribosomal RNA (rRNA) gene sequencing is a popular approach in microbiome studies, and various software tools and data resources have been developed for microbial...
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Effects of the Administration of Probiotics on Fecal Microbiota Diversity and Composition in Healthy Individuals

Noh CK, Kim BS, Hong G, Cheong JY, Lee KJ

  • KMID: 2417390
  • J Neurogastroenterol Motil.
  • 2018 Jul;24(3):452-459.
  • doi: 10.5056/jnm17140
BACKGROUND/AIMS: Probiotics are expected to modify the composition of gut microbiota. We aimed to investigate the changes in the composition and diversity of gut microbiota by the administration of probiotics...
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Characterization of the fecal microbiota differs between age groups in Koreans

Kook SY, Kim Y, Kang B, Choe YH, Kim YH, Kim S

BACKGROUND/AIMS: Tens of trillions of microorganisms constitute the gut microbiota of the human body. The microbiota plays a critical role in maintaining host immunity and metabolism. Analyses of the gut...
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ArmA and RmtB Were the Predominant 16S RMTase Genes Responsible for Aminoglycoside-resistant Isolates in Korea

Lee TH, Hwang JH, Lee WK, Shin MK, Woo HR, Chung KM, Lee CS

Pathogenic gram-negatives that produce 16S ribosomal RNA methyltransferases (16S RMTases) have already been distributed all over the world. To investigate the predominance of aminoglycoside resistance associated with 16S RMTases in...
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First Case of Psychrobacter sanguinis Bacteremia in a Korean Patient

Lim S, Yu HJ, Lee S, Joo EJ, Yeom JS, Woo HY, Park H, Kwon MJ

Psychrobacter sanguinis has been described as a Gram-negative, aerobic coccobacilli originally isolated from environments and seaweed samples. To date, 6 cases of P. sanguinis infection have been reported. A 53-year-old...
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Development of Species-specific PCR Primers for Detecting Peptoniphilus mikwangii

Park SN, Lee J, Kook JK

In a previous study, Peptoniphilus mikwangii was isolated from the human oral cavity as a new species. The purpose of this study was to develop P. mikwangii-specific PCR primers. The...
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Primary Cutaneous Nocardiosis Caused by Nocardia takedensis

Lee TG, Jin WJ, Jeong WS, Moon SH, Kwon TG, Lee SK, Kang HS, Hwangbo H

Nocardia species are aerobic, gram-positive, filamentous, partially acid-fast actinomycetes which are found worldwide in soil and decaying organic plant matter. When they infect human beings, they generally enter through the...
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Laboratory Identification of Leptotrichia Species Isolated From Bacteremia Patients at a Single Institution

Cho EH, Park KS, Yang M, Song DJ, Huh HJ, Ki CS, Lee NY

We describe the laboratory identification of Leptotrichia species from clinical isolates collected over a six-year period. Five isolates from blood cultures were identified as Leptotrichia species. Gram stain showed large,...
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The microbiome of the lung and its extracellular vesicles in nonsmokers, healthy smokers and COPD patients

Kim HJ, Kim YS, Kim KH, Choi JP, Kim YK, Yun S, Sharma L, Dela Cruz , Lee JS, Oh YM, Lee SD, Lee SW

Chronic obstructive pulmonary disease (COPD) is a chronic inflammatory disease, and bacterial infection plays a role in its pathogenesis. Bacteria secrete nanometer-sized extracellular vesicles (EVs), which may induce more immune...
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Probiotic properties and adsorption of Enterococcus faecalis PSCT3-7 to vermiculite

Kim JY, Awji EG, Park NH, Park JY, Kim JC, Lee SP, Suh JW, Park SC

The probiotic properties of Enterococcus (E.) faecalis PSCT3-7, a new strain isolated from the intestines of pigs fed dietary fiber containing 50% sawdust, were investigated. E. faecalis PSCT3-7 tolerated a...
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The Effect of Probiotics, Antibiotics, and Antipyretic Analgesics on Gut Microbiota Modification

Yun Y, Kim HN, Kim SE, Chang Y, Ryu S, Shin H, Woo SY, Kim HL

Human gut microbial community is playing a critical role in human health and associated with different human disease. In parallel, probiotics, antibiotics, and antipyretic analgesics (AAs) were developed to improve...
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First Case Report of Bacteremia Due to Catabacter hongkongensis in a Korean Patient

Choi YJ, Won EJ, Kim SH, Shin MG, Shin JH, Suh SP

No abstract available.
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Chronic Early-life Stress in Rat Pups Alters Basal Corticosterone, Intestinal Permeability, and Fecal Microbiota at Weaning: Influence of Sex

Moussaoui , Jacobs JP, Larauche M, Biraud M, Million M, Mayer E, Taché Y

  • KMID: 2367465
  • J Neurogastroenterol Motil.
  • 2017 Jan;23(1):135-143.
  • doi: 10.5056/jnm16105
BACKGROUND/AIMS: Wistar rat dams exposed to limited nesting stress (LNS) from post-natal days (PND) 2 to 10 display erratic maternal behavior, and their pups show delayed maturation of the hypothalamic-pituitary-adrenal...
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Native Valve Endocarditis due to Corynebacterium striatum confirmed by 16S Ribosomal RNA Sequencing: A Case Report and Literature Review

Hong HL, Koh HI, Lee AJ

Corynebacterium species are non-fermentous Gram-positive bacilli that are normal flora of human skin and mucous membranes and are commonly isolated in clinical specimens. Non-diphtheriae Corynebacterium are regarded as contaminants when...
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Tick-borne rickettsial pathogens in questing ticks, removed from humans and animals in Mexico

Sosa-Gutierrez CG, Vargas-Sandoval M, Torres J, Gordillo-Pérez G

Tick-borne rickettsial diseases (TBRD) are commonly encountered in medical and veterinary clinical settings. The control of these diseases is difficult, requiring disruption of a complex transmission chain involving a vertebrate...
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