- Editor’s introduction to the special section on the 7th Biomedical Linked Annotation Hackathon (BLAH7)
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Kim JD, Cohen KB, Rinaldi F, Lu Z, Park HS
- KMID: 2521521
- Genomics Inform.
- 2021 Sep;19(3):e20.
- doi: 10.5808/gi.19.3.e1
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- LitCovid-AGAC: cellular and molecular level annotation data set based on COVID-19
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Ouyang S, Wang Y, Zhou K, Xia J
- KMID: 2521524
- Genomics Inform.
- 2021 Sep;19(3):e23.
- doi: 10.5808/gi.21013
Currently, coronavirus disease 2019 (COVID-19) literature has been increasing dramatically, and the increased text amount make it possible to perform large scale text mining and knowledge discovery. Therefore, curation of... -
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- OryzaGP 2021 update: a rice gene and protein dataset for named-entity recognition
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Larmande P, Liu Y, Yao X, Xia J
- KMID: 2521528
- Genomics Inform.
- 2021 Sep;19(3):e27.
- doi: 10.5808/gi.21015
Due to the rapid evolution of high-throughput technologies, a tremendous amount of data is being produced in the biological domain, which poses a challenging task for information extraction and natural... -
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- Visualizing the phenotype diversity: a case study of Alexander disease
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Dohi E, Bangash AH
- KMID: 2521529
- Genomics Inform.
- 2021 Sep;19(3):e28.
- doi: 10.5808/gi.21016
Since only a small number of patients have a rare disease, it is difficult to identify all of the features of these diseases. This is especially true for patients presenting... -
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- A biomedically oriented automatically annotated Twitter COVID-19 dataset
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Hernandez LAR, Callahan TJ, Banda JM
- KMID: 2521522
- Genomics Inform.
- 2021 Sep;19(3):e21.
- doi: 10.5808/gi.21011
The use of social media data, like Twitter, for biomedical research has been gradually increasing over the years. With the coronavirus disease 2019 (COVID-19) pandemic, researchers have turned to more... -
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- Draft genome of Semisulcospira libertina, a species of freshwater snail
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Gim JA, Baek KW, Hah YS, Choo HJ, Kim JS, Yoo JI
- KMID: 2521533
- Genomics Inform.
- 2021 Sep;19(3):e32.
- doi: 10.5808/gi.21039
Semisulcospira libertina, a species of freshwater snail, is widespread in East Asia. It is important as a food source. Additionally, it is a vector of clonorchiasis, paragonimiasis, metagonimiasis, and other... -
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- COVID-19 recommender system based on an annotated multilingual corpus
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Barros M, Ruas P, Sousa D, Bangash AH, Couto FM
- KMID: 2521525
- Genomics Inform.
- 2021 Sep;19(3):e24.
- doi: 10.5808/gi.21008
Tracking the most recent advances in Coronavirus disease 2019 (COVID-19)‒related research is essential, given the disease's novelty and its impact on society. However, with the publication pace speeding up, researchers... -
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- Constructing Japanese MeSH term dictionaries related to the COVID-19 literature
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Yamaguchi A, Takatsuki T, Tateisi Y, Soares F
- KMID: 2521526
- Genomics Inform.
- 2021 Sep;19(3):e25.
- doi: 10.5808/gi.21012
The coronavirus disease 2019 (COVID-19) pandemic has led to a flood of research papers and the information has been updated with considerable frequency. For society to derive benefits from this... -
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- Chromosome-specific polymorphic SSR markers in tropical eucalypt species using low coverage whole genome sequences: systematic characterization and validation
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Patturaj M, Munusamy A, Kannan N, Kandasamy U, Ramasamy Y
- KMID: 2521534
- Genomics Inform.
- 2021 Sep;19(3):e33.
- doi: 10.5808/gi.21031
Eucalyptus is one of the major plantation species with wide variety of industrial uses. Polymorphic and informative simple sequence repeats (SSRs) have broad range of applications in genetic analysis. ... -
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- O-JMeSH: creating a bilingual English-Japanese controlled vocabulary of MeSH UIDs through machine translation and mutual information
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Soares F, Tateisi Y, Takatsuki T, Yamaguchi A
- KMID: 2521527
- Genomics Inform.
- 2021 Sep;19(3):e26.
- doi: 10.5808/gi.21014
Previous approaches to create a controlled vocabulary for Japanese have resorted to existing bilingual dictionary and transformation rules to allow such mappings. However, given the possible new terms introduced due... -
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- Improving classification of low-resource COVID-19 literature by using Named Entity Recognition
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Lithgow-Serrano O, Cornelius J, Kanjirangat V, Méndez-Cruz CF, Rinaldi F
- KMID: 2521523
- Genomics Inform.
- 2021 Sep;19(3):e22.
- doi: 10.5808/gi.21018
Automatic document classification for highly interrelated classes is a demanding task that becomes more challenging when there is little labeled data for training. Such is the case of the coronavirus... -
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- Rapid and sensitive detection of Salmonella species targeting the hilA gene using a loop-mediated isothermal amplification assay
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Chu J, Shin J, Kang S, Shin S, Chung YJ
- KMID: 2521531
- Genomics Inform.
- 2021 Sep;19(3):e30.
- doi: 10.5808/gi.21048
Salmonella species are among the major pathogens that cause foodborne illness outbreaks. In this study, we aimed to develop a loop-mediated isothermal amplification (LAMP) assay for the rapid and sensitive... -
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- Comparative genome characterization of Leptospira interrogans from mild and severe leptospirosis patients
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Anuntakarun S, Sawaswong V, Jitvaropas R, Praianantathavorn K, Poomipak W, Suputtamongkol Y, Chirathaworn C, Payungporn S
- KMID: 2521532
- Genomics Inform.
- 2021 Sep;19(3):e31.
- doi: 10.5808/gi.21037
Leptospirosis is a zoonotic disease caused by spirochetes from the genus Leptospira. In Thailand, Leptospira interrogans is a major cause of leptospirosis. Leptospirosis patients present with a wide range of... -
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- High-accuracy quantitative principle of a new compact digital PCR equipment: Lab On An Array
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Lee H, Lee CJ, Kim DH, Cho CS, Shin W, Han K
- KMID: 2521535
- Genomics Inform.
- 2021 Sep;19(3):e34.
- doi: 10.5808/gi.21035
Digital PCR (dPCR) is the third-generation PCR that enables real-time absolute quantification without reference materials. Recently, global diagnosis companies have developed new dPCR equipment. In line with the development, the... -
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- Molecular insights into the role of genetic determinants of congenital hypothyroidism
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Kollati Y, Akella RRD, Naushad SM, Patel RK, Reddy GB, Dirisala VR
- KMID: 2521530
- Genomics Inform.
- 2021 Sep;19(3):e29.
- doi: 10.5808/gi.21034
In our previous studies, we have demonstrated the association of certain variants of the thyroid-stimulating hormone receptor (TSHR), thyroid peroxidase (TPO), and thyroglobulin (TG) genes with congenital hypothyroidism. Herein, we... -
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