- CaGe: A Web-Based Cancer Gene Annotation System for Cancer Genomics
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Park YK, Kang TW, Baek SJ, Kim KI, Kim SY, Lee D, Kim YS
- KMID: 2053282
- Genomics Inform.
- 2012 Mar;10(1):33-39.
- doi: 10.5808/GI.2012.10.1.33
High-throughput genomic technologies (HGTs), including next-generation DNA sequencing (NGS), microarray, and serial analysis of gene expression (SAGE), have become effective experimental tools for cancer genomics to identify cancer-associated somatic genomic... -
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- Web-Based Database and Viewer of East Asian Copy Number Variations
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Kim JH, Hu HJ, Chung YJ
- KMID: 2053287
- Genomics Inform.
- 2012 Mar;10(1):65-67.
- doi: 10.5808/GI.2012.10.1.65
We have discovered copy number variations (CNVs) in 3,578 Korean individuals with the Affymetrix Genome-Wide SNP array 5.0, and 4,003 copy number variation regions (CNVRs) were defined in a previous... -
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- Efficient Mining of Interesting Patterns in Large Biological Sequences
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Rashid MM, Karim MR, Jeong BS, Choi HJ
- KMID: 2053284
- Genomics Inform.
- 2012 Mar;10(1):44-50.
- doi: 10.5808/GI.2012.10.1.44
Pattern discovery in biological sequences (e.g., DNA sequences) is one of the most challenging tasks in computational biology and bioinformatics. So far, in most approaches, the number of occurrences is... -
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- An Efficient Approach to Mining Maximal Contiguous Frequent Patterns from Large DNA Sequence Databases
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Karim MR, Rashid MM, Jeong BS, Choi HJ
- KMID: 2053285
- Genomics Inform.
- 2012 Mar;10(1):51-57.
- doi: 10.5808/GI.2012.10.1.51
Mining interesting patterns from DNA sequences is one of the most challenging tasks in bioinformatics and computational biology. Maximal contiguous frequent patterns are preferable for expressing the function and structure... -
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- Possibility of the Use of Public Microarray Database for Identifying Significant Genes Associated with Oral Squamous Cell Carcinoma
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Kim KY, Cha IH
- KMID: 2053281
- Genomics Inform.
- 2012 Mar;10(1):23-32.
- doi: 10.5808/GI.2012.10.1.23
There are lots of studies attempting to identify the expression changes in oral squamous cell carcinoma. Most studies include insufficient samples to apply statistical methods for detecting significant gene sets.... -
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- CysQ of Cryptosporidium parvum, a Protozoa, May Have Been Acquired from Bacteria by Horizontal Gene Transfer
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Lee JY, Kim S
- KMID: 2053279
- Genomics Inform.
- 2012 Mar;10(1):9-15.
- doi: 10.5808/GI.2012.10.1.9
Horizontal gene transfer (HGT) is the movement of genetic material between kingdoms and is considered to play a positive role in adaptation. Cryptosporidium parvum is a parasitic protozoan that causes... -
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- Comparative Evaluation of Intron Prediction Methods and Detection of Plant Genome Annotation Using Intron Length Distributions
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Yang L, Cho HG
- KMID: 2053286
- Genomics Inform.
- 2012 Mar;10(1):58-64.
- doi: 10.5808/GI.2012.10.1.58
Intron prediction is an important problem of the constantly updated genome annotation. Using two model plant (rice and Arabidopsis) genomes, we compared two well-known intron prediction tools: the Blast-Like Alignment... -
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- Decreases in Casz1 mRNA by an siRNA Complex Do not Alter Blood Pressure in Mice
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Ji SM, Shin YB, Park SY, Lee HJ, Oh B
- KMID: 2053283
- Genomics Inform.
- 2012 Mar;10(1):40-43.
- doi: 10.5808/GI.2012.10.1.40
Recent genomewide association studies of large samples have identified genes that are associated with blood pressure. The Global Blood Pressure Genetics (Global BPgen) and Cohorts for Heart and Aging Research... -
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- Differential Expression of PKD2-Associated Genes in Autosomal Dominant Polycystic Kidney Disease
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Yook YJ, Woo YM, Yang MH, Ko JY, Kim BH, Lee EJ, Chang ES, Lee MJ, Lee S, Park JH
- KMID: 2053280
- Genomics Inform.
- 2012 Mar;10(1):16-22.
- doi: 10.5808/GI.2012.10.1.16
Autosomal dominant polycystic kidney disease (ADPKD) is characterized by formation of multiple fluid-filled cysts that expand over time and destroy renal architecture. The proteins encoded by the PKD1 and PKD2... -
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- Survey of the Applications of NGS to Whole-Genome Sequencing and Expression Profiling
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Lim JS, Choi BS, Lee JS, Shin C, Yang TJ, Rhee JS, Lee JS, Choi IY
- KMID: 2053278
- Genomics Inform.
- 2012 Mar;10(1):1-8.
- doi: 10.5808/GI.2012.10.1.1
Recently, the technologies of DNA sequence variation and gene expression profiling have been used widely as approaches in the expertise of genome biology and genetics. The application to genome study... -
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