- A Simple GUI-based Sequencing Format Conversion Tool for the Three NGS Platforms
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Rhie A, Yang S, Lee KE, Thong CT, Park HS
- KMID: 2166486
- Genomics Inform.
- 2010 Jun;8(2):97-99.
To allow for a quick conversion of the proprietary sequence data from various sequencing platforms, sequence format conversion toolkits are required that can be easily integrated into workflow systems. In... -
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- Java DOM Parsers to Convert KGML into SBML and BioPAX Common Exchange Formats
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Lee KE, Jang MH, Rhie A, Thong CT, Yang S, Park HS
- KMID: 2166485
- Genomics Inform.
- 2010 Jun;8(2):94-96.
Integrating various pathway data collections to create new biological knowledge is a challenge, for which novel computational tools play a key role. For this purpose, we developed the Java-based conversion... -
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- Non-Synteny Regions in the Human Genome
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Lee K, Kim S
- KMID: 2166483
- Genomics Inform.
- 2010 Jun;8(2):86-89.
Closely related species share large genomic segments called syntenic regions, where the genomic elements such as genes are arranged co-linearly among the species. While synteny is an important criteria in... -
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- In Silico Study of Human Gap Junction Beta-2 Protein by Homology Modeling
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Shehzadi A, Masood K
- KMID: 2166480
- Genomics Inform.
- 2010 Jun;8(2):70-75.
Asp66his, Asp54Lys, and Asp50Asn are mutations in connexin 26 that are observed in the clinic and give rise to autosomal dominant syndromes. They are the result of point mutations in... -
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- A Comparative Analysis of Monofunctional Biosynthetic Peptidoglycan Transglycosylase (MBPT) from Pathogenic and Non-pathogenic Bacteria
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Baker AT, Takahashi , Chandra SB
- KMID: 2166479
- Genomics Inform.
- 2010 Jun;8(2):63-69.
Monofunctional biosynthetic peptidoglycan transglycosylase (MBPT) catalyzes the formation of the glycan chain in bacterial cell walls from peptidoglycan subunits: N-acetylglucosamine (NAG) and acetylmuramic acid (NAM). Bifunctional glycosyltransferases such as the... -
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- Development of Optimal Breeding Pigs Using DNA Marker Information
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Kim SW, Roh JG, Cho YI, Choi BH, Kim TH, Kim JJ, Kim KS
- KMID: 2166482
- Genomics Inform.
- 2010 Jun;8(2):81-85.
The aim of the study was to investigate pig reference families, generated from Korean native pigs (KNP) that were crossed with Yorkshire (YS) breeds, which were used to evaluate genetic... -
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- AKAPDB: A-Kinase Anchoring Proteins Database
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Kim IS, Lim KJ, Han BG, Chung MG, Kim KW
- KMID: 2166484
- Genomics Inform.
- 2010 Jun;8(2):90-93.
A-kinase-anchoring proteins (AKAPs) are scaffold proteins which compartmentalize protein kinase A (PKA, cAMP-dependent protein kinase) and other enzymes to specific subcellular sites. The spatiotemporal control of these enzymes by AKAPs... -
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- No Association between Copy Number Variation of the TCRB Gene and the Risk of Autism Spectrum Disorder in the Korean Population
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Yang SY, Yim SH, Hu HJ, Kim SA, Yoo HJ, Chung YJ
- KMID: 2166481
- Genomics Inform.
- 2010 Jun;8(2):76-80.
Although autism spectrum disorder (ASD) has been thought to have a substantial genetic background, major contributing genes have yet to be identified or successfully replicated. Immunological dysfunction has been suggested... -
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