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BioStore: A Repository System for Registering and Distributing Public Biology Databases

Tae H, Han JM, Ahn BY, Park K

  • KMID: 2166443
  • Genomics Inform.
  • 2009 Mar;7(1):49-51.
Although abundant biology data have been accumulated in public biology databases, such as GenBank and PIR, few easy-interface services are provided for users to access or update them. We have...
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A Simple Java Sequence Alignment Editing Tool for Resolving Complex Repeat Regions

Ham SI, Lee KE, Park HS

  • KMID: 2166442
  • Genomics Inform.
  • 2009 Mar;7(1):46-48.
Finishing is the most time-consuming step in sequencing, and many genome projects are left unfinished due to complex repeat regions. Here, we have developed BACContigEditor, a prototype shotgun sequence finishing...
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An Integrated Database and Web Service for Microbial Resources at KACC

Kim CK, Jeon YA, Cho GT, Kwon SW, Kim YH, Hong SB

  • KMID: 2166441
  • Genomics Inform.
  • 2009 Mar;7(1):41-45.
The Korean Agricultural Culture Collection (KACC) has developed a web-based system to provide an integrated database with information updates about microbial resources. This integrated database consists of 5 major functions...
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EST Knowledge Integrated Systems (EKIS): An Integrated Database of EST Information for Research Application

Kim DW, Jung TS, Choi YS, Nam SH, Kwon HR, Kim DW, Choi HS, Choi SH, Park HS

  • KMID: 2166440
  • Genomics Inform.
  • 2009 Mar;7(1):38-40.
The EST Knowledge Integrated System, EKIS (http://ekis.kribb.re.kr), was established as a part of Korea's Ministry of Education, Science and Technology initiative for genome sequencing and application research of the biological...
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Choosing Optimal STR Markers for Quality Assurance of Distributed Biomaterials in Biobanking

Chung TH, Lee H, Lee M, Jeon JP, Kim K, Han BG

  • KMID: 2166439
  • Genomics Inform.
  • 2009 Mar;7(1):32-37.
The quality assurance (QA) is of utmost importance in biobanks when archived biomaterials are distributed to biomedical researchers. For sample authentication and cross-contamination detection, the two fundamental elements of QA,...
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Bioinformatics Analysis of Hsp20 Sequences in Proteobacteria

Heine M, Chandra SB

  • KMID: 2166438
  • Genomics Inform.
  • 2009 Mar;7(1):26-31.
Heat shock proteins are a class of molecular chaperones that can be found in nearly all organisms from Bacteria, Archaea and Eukarya domains. Heat shock proteins experience increased transcription during...
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Interaction between Smoking and the STAB2 Gene in the Severity of Rheumatoid Arthritis

Min JY, Min KB, Sung J, Cho SI

  • KMID: 2166437
  • Genomics Inform.
  • 2009 Mar;7(1):20-25.
Rheumatoid arthritis (RA) is a chronic autoimmune disorder that is characterized by inflammation of the synovial tissue and deterioration of the joint and bone. A recent study reported a potential...
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Association of Common Vitamin D Receptor Gene Variations with Fracture Risk and Bone Mineral Density in Postmenopausal Korean Population

Hwang JY, Lee SH, Kim GS, Koh JM, Go MJ, Kim TH, Hong JM, Park EK, Kim SY, Lee JY

  • KMID: 2166436
  • Genomics Inform.
  • 2009 Mar;7(1):13-19.
Osteoporosis is characterized by impaired osteogenesis. BMD is a major determinant of bone strength. The role of the VDR gene in predisposition to primary osteoporosis has been recognized. However, population-based...
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An Alternative Way of Constructing Ancestral Graphs Using Marker Allele Ages from Population Linkage Disequilibrium Information

Park L

  • KMID: 2166435
  • Genomics Inform.
  • 2009 Mar;7(1):1-12.
An alternative way of constructing ancestral graphs, which is different from the coalescent-based approach, is proposed using population linkage disequilibrium (LD) data. The main difference from the existing method is...
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