- The AB05 NIAB Tools Workbench for Building Automatic Biopathway Maps for Agricultural Organisms
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Cho MK, Yoon KO, Park HS
- KMID: 2166289
- Genomics Inform.
- 2007 Dec;5(4):200-202.
For the past several years, we have built various tools for automatic construction of biopathways to help biological experts, especially in the field of agriculture. We integrated several systems for... -
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- Biological Object Downloader (BOD) Service for Easy Download and Management of Biological Databases
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Park D, Lee J, Yoon G, Gong S, Bhak J
- KMID: 2166287
- Genomics Inform.
- 2007 Dec;5(4):196-199.
BOD is an FTP service management tool on the Internet. It was developed for biological researchers in South Korea. It enables easier and faster access of bioinformation without having to... -
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- RGISS: Rice (Oryza sativa L. ssp. japonica) Genome Information Service System
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Lee D, Seo H, Hahn JH, Kong EB, Park K
- KMID: 2166285
- Genomics Inform.
- 2007 Dec;5(4):194-195.
We have constructed the Rice Genome Information Service System (RGISS), which is an information service system of the Oryza sativa L. ssp. japonica (rice) genome, using the released version of... -
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- FESD II: A Revised Functional Element SNP Database of Human Ethnicities
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Kim HJ, Kim IH, Shin KH, Park YK, Kang H, Kim YJ
- KMID: 2166283
- Genomics Inform.
- 2007 Dec;5(4):188-193.
The Functional Element SNPs Database (FESD) categorizes functional elements in human genic regions and provides a set of single nucleotide polymorphisms (SNPs) located within each area. Users may select a... -
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- REPEATOME: A Database for Repeat Element Comparative Analysis in Human and Chimpanzee
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Woo T, Hong TH, Kim SS, Chung WH, Kang HJ, Kim CB, Seo J
- KMID: 2166281
- Genomics Inform.
- 2007 Dec;5(4):179-187.
An increasing number of primate genomes are being sequenced. A direct comparison of repeat elements in human genes and their corresponding chimpanzee orthologs will not only give information on their... -
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- Conservation of cis-Regulatory Element Controlling Timely Translation in the 3'-UTR of Selected Mammalian Maternal Transcripts
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Lee HJ, Lim Y, Chang SH, Min K, Han CT, Hwang SY
- KMID: 2166279
- Genomics Inform.
- 2007 Dec;5(4):174-178.
The earliest stages of mammalian embryogenesis are governed by the activity of maternally inherited transcripts and proteins. Cytoplasmic polyadenylation of selected maternal mRNA has been reported to be a major... -
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- Application of Random Forests to Association Studies Using Mitochondrial Single Nucleotide Polymorphisms
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Kim Y, Kim H
- KMID: 2166277
- Genomics Inform.
- 2007 Dec;5(4):168-173.
In previous nuclear genomic association studies, Random Forests (RF), one of several up-to-date machine learning methods, has been used successfully to generate evidence of association of genetic polymorphisms with diseases... -
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- Genetic Polymorphisms of UGT1A and their Association with Clinical Factors in Healthy Koreans
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Kim JO, Shin JY, Lee MA, Chae HS, Lee CH, Roh JS, Jin SK, Kang TS, Choi JR, Kang JH
- KMID: 2166275
- Genomics Inform.
- 2007 Dec;5(4):161-167.
Glucuronidation by the uridine diphosphateglucuronosyltransferase 1A enzymes (UGT1As) is a major pathway for elimination of particular drugs and endogenous substances, such as bilirubin. We examined the relation of eight single... -
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- Characterization of Single Nucleotide Polymorphisms in 55 Disease-Associated Genes in a Korean Population
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Lee SK, Kim HG, Kang JJ, Oh W, Oh B, Kwack KB
- KMID: 2166273
- Genomics Inform.
- 2007 Dec;5(4):152-160.
Most common diseases are caused by multiple genetic and environmental factors. Among the genetic factors, single nucleotide polymorphisms (SNPs) are common DNA sequence variations in individuals and can serve as... -
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- Calibrating Thresholds to Improve the Detection Accuracy of Putative Transcription Factor Binding Sites
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Kim YJ, Ryu GM, Park C, Kim KW, Oh B, Kim YY, Gu MB
- KMID: 2166271
- Genomics Inform.
- 2007 Dec;5(4):143-151.
To understand the mechanism of transcriptional regulation, it is essential to detect promoters and regulatory elements. Various kinds of methods have been introduced to improve the prediction accuracy of regulatory... -
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