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Xperanto: A Web-Based Integrated System for DNA Microarray Data Management and Analysis

Park JY, Park YR, Park CH, Kim JH, Kim JH

  • KMID: 1572620
  • Genomics Inform.
  • 2005 Mar;3(1):39-42.
DNA microarray is a high-throughput biomedical technology that monitors gene expression for thousands of genes in parallel. The abundance and complexity of the gene expression data have given rise to...
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BioSubroutine: an Open Web Server for Bioinformatics Algorithms and Subroutines

Lee J, Kim H, Lee W, Chung D, Bhak J

  • KMID: 1572619
  • Genomics Inform.
  • 2005 Mar;3(1):35-38.
We present BioSubroutine, an open depository server that automatically categorizes various subroutines frequently used in bioinformatics research. We processed a large bioinformatics subroutine library called Bio.pl that was the first...
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Supervised Model for Identifying Differentially Expressed Genes in DNA Microarray Gene Expression Dataset Using Biological Pathway Information

Chung TS, Kim K, Kim JH

  • KMID: 1572618
  • Genomics Inform.
  • 2005 Mar;3(1):30-34.
Microarray technology makes it possible to measure the expressions of tens of thousands of genes simultaneously under various experimental conditions. Identifying differentially expressed genes in each single experimental condition is...
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Cloning of Xenopus laevis TRPV2 by Gene Prediction

Lee JY, Shim WS, Oh U

  • KMID: 1572616
  • Genomics Inform.
  • 2005 Mar;3(1):24-29.
TRPV2 is a non-specific cation channel expressed in sensory neurons, and activated by noxious heat. Particularly, TRPV2 has six transmembrane domains and three ankyrin repeats. TRPV2 has been cloned from...
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Identification of Caenorhabditis elegans MicroRNA Targets Using a Kernel Method

Lee WJ, Nam JW, Kim SK, Zhang BT

  • KMID: 1572614
  • Genomics Inform.
  • 2005 Mar;3(1):15-23.
BACKGROUND: MicroRNAs (miRNAs)are a class of noncoding RNAs found in various organisms such as plants and mammals. However, most of the mRNAs regulated by miRNAs are unknown. Furthermore, miRNA targets...
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Gene Expression Analysis of Megakaryocytes Derived from Human Umbilical Cord CD34(+) Cells by Thrombopoietin

Kim JA, Kim HL

  • KMID: 1572613
  • Genomics Inform.
  • 2005 Mar;3(1):8-14.
Although much is known about the molecular biology of platelets, the megakaryocytes' (MKs) molecular biology was not understood so well because of their rareness. By the cloning and characterization of...
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DNA Pooling as a Tool for Case-Control Association Studies of Complex Traits

Ahn C, King TM, Lee K, Kang SH

  • KMID: 1572612
  • Genomics Inform.
  • 2005 Mar;3(1):1-7.
Case-control studies are widely used for disease gene mapping using individual genotyping data. However, analyses of large samples are often impractical due to the expense of individual genotyping. The use...
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