- Developing JSequitur to Study the Hierarchical Structure of Biological Sequences in a Grammatical Inference Framework of String Compression Algorithms
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Galbadrakh B, Lee KE, Park HS
- KMID: 2053308
- Genomics Inform.
- 2012 Dec;10(4):266-270.
- doi: 10.5808/GI.2012.10.4.266
Grammatical inference methods are expected to find grammatical structures hidden in biological sequences. One hopes that studies of grammar serve as an appropriate tool for theory formation. Thus, we have... -
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- J2.5dPathway: A 2.5D Visualization Tool to Display Selected Nodes in Biological Pathways, in Parallel Planes
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Ham SI, Song EH, Yang SD, Thong CT, Rhie A, Galbadrakh B, Lee KE, Park HS, Lee SH
- KMID: 1469578
- Genomics Inform.
- 2009 Sep;7(3):171-174.
The characteristics of metabolic pathways make them particularly amenable to layered graph drawing methods. This paper presents a visual Java-based tool for drawing and annotating biological pathways in twoand- a-half... -
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- Recent Progresses in the Linguistic Modeling of Biological Sequences Based on Formal Language Theory
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Park HS, Galbadrakh B, Kim YM
- KMID: 1450880
- Genomics Inform.
- 2011 Mar;9(1):5-11.
Treating genomes just as languages raises the possibility of producing concise generalizations about information in biological sequences. Grammars used in this way would constitute a model of underlying biological processes... -
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