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Bioinformatics Approaches for the Identification and Annotation of RNA Editing Sites

Lee SY, Kim JH

Post-transcriptional nucleotide sequence modification of transcripts by RNA editing is an important molecular mechanism in the regulation of protein function and is associated with a variety of human disease phenotypes....
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Identification of Diverse Adenosine-to-Inosine RNA Editing Subtypes in Colorectal Cancer

Lee SH, Kim HP, Kang JK, Song SH, Han SW, Kim TY

PURPOSE: RNA editing generates protein diversity by altering RNA sequences in coding regions without changing the overall DNA sequence. Adenosine-to-inosine (A-to-I) RNA editing events have recently been reported in some...
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Curcumin modulates the apolipoprotein B mRNA editing by coordinating the expression of cytidine deamination to uridine editosome components in primary mouse hepatocytes

He P, Tian N

Curcumin, an active ingredient of Curcuma longa L., can reduce the concentration of low-density lipoproteins in plasma, in different ways. We had first reported that curcumin exhibits hypocholesterolemic properties by...
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Identification of neoantigens derived from alternative splicing and RNA modification

Park J, Chung YJ

The acquisition of somatic mutations is the most common event in cancer. Neoantigens expressed from genes with mutations acquired during carcinogenesis can be tumor-specific. Since the immune system recognizes tumor-specific...
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mRNA Expression and RNA Editing (2451 C-to-U) of IL-12 Receptor beta2 in Adult Atopic Patients

Kim EJ, Lee WM, Ha JS, Ryoo NH, Jeon DS, Kim JR

Interleukin (IL)-12 activates T helper (Th) 1 cells to produce interferon (IFN)-gamma which inhibits atopic inflammation. IL-12 acts through interaction with its receptor, especially beta2 subunit. In several studies, the...
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A Statistical Analysis of SNPs, In-Dels, and Their Flanking Sequences in Human Genomic Regions

Shin SW, Kim YJ, Kim BD

  • KMID: 2166258
  • Genomics Inform.
  • 2007 Jun;5(2):68-76.
Due to the increasing interest in SNPs and mutational hot spots for disease traits, it is becoming more important to define and understand the relationship between SNPs and their flanking...
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